Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1403 ATGGGTTCGGGAACCAATTTGGTGACTACAGTCATTGGGTTTGGAATGAGTACAACTTTCATCGTATTCGTTTGCACCAGAATAATTTGTGGAAGACTGCGAGAACGTCTGCGTTCAAGAACTATATATGAGATTGAATCAAGAGCAGATATAGAACGGCCAGAACATCATGCTAATGACTCTGAACCAGCTTTTGTTGCTGCAATCCCCACTTTGAACTTCAACCAAGAAGCCTTCAGGTCCATTCAATGTACACAGTGTGTGATATGTTTGTCAGAGTACAAAGAAAAAGAACTATTGCGCATCATACCAAAATGTGGCCACAATTTTCATCTCTCTTGCATTGATATGTGGCTAAGAAAACAATCTACATGTCCAGTGTGCCGTTTGCCACTGCAGAATGCTTCTGAAACAAAACATGTGATACCAGTAACATTTACCATTACTCACTCTCTTGATGACTCCAATACTTCAGAAAGTAACATAGAGAATGAGAGGCAAGCTGAACCTAATGCCAGTAACTCCTTACAATTAACTTCCGGAGAATCAGAAGCTAGACAGTGA 564 0.4043 MGSGTNLVTTVIGFGMSTTFIVFVCTRIICGRLRERLRSRTIYEIESRADIERPEHHANDSEPAFVAAIPTLNFNQEAFRSIQCTQCVICLSEYKEKELLRIIPKCGHNFHLSCIDMWLRKQSTCPVCRLPLQNASETKHVIPVTFTITHSLDDSNTSESNIENERQAEPNASNSLQLTSGESEARQ* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1403 187 SUPERFAMILY RING/U-box 86 135 - -
Apr10g1403 187 SMART ring_2 87 128 IPR001841 -
Apr10g1403 187 Pfam Ring finger domain 86 129 IPR001841 -
Apr10g1403 187 CDD RING-H2_EL5_like 86 129 - -
Apr10g1403 187 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Apr10g1403 187 PANTHER OS11G0150450 PROTEIN 1 174 - -
Apr10g1403 187 MobiDBLite consensus disorder prediction 152 187 - -
Apr10g1403 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 139 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1403 Apr-Chr10 26307935 26309303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1403 63 136 C3H Transcription Factor Family AT4G33565 41.892 1.32e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1403 - - ccaj:109802319 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1403 10 26307935 26309303 Apr10g1403 10 26307935 26309303 ECH