Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1401 ATGGCAGGAACTGAAGCTACGAAATATGCTTCTGCTACAACCAGTACTACAAACAATTTAGCCAAATCGAACAAACCCATCATCAAAAGGTTCATTGGGGTGAGGCAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCTTCTCAGCATGTGAGGTTGTGGCTTGGAACCTATGATACACCAGAAGAAGCTGCAAGGGCTTATGATGAAGCAGCTCGTGCACTACGAGGGGAAAATGCCCGAACCAACTTTGCACCAGTGAACCAATCCATAGGCCAATCAGGTTCTAATCCTTCTAGTGAAGGGCTTTTAATTTCAACTGGGTCTGATGGAAAGCATGGTTTGAGCTTTGCTTCATTGAAAGCCAAGTTGAGCAAGAATCTCCAAAGCATTATGGCTAGAGCAAGTGATAACAAGTCCTCAAAGAGTAGGGTGAGTGACCACTTCACTTTTGCTAGCATATTCCATCGTAGGAGTTACCAAATCCCTGCAATGGATATGAAAAACATTGAAAAAGTGGTGCAGCCTAGTATTATTGTGCCACCTGTGGATGGTGATTACCCTGCTGCTACTTGGGAAAGTTCTAGTATGTCTGATTGTAGTTCTGAGTGGGTCGGGTTCAGACAACCCGGGTTGGACTCTGATGGGTCGGATATAGGGGAAGTTGGTGTTGGTGATCAAGGGTTCTTGGACCAATTGATGGGGTGGGCTGATAGCAATGATGCCAGTGGAAGTGAGGGTTCAAGGAGTAAGAGGTTCAAGGTGTCTTCTTCTGTGCTTGTGCCCCCAACTTTCACTGGCTCTTCTTATGATTGTGGATCCCCTTATAGCGGTTATGCCTCTCCATATAACGGTTTTGCCTCCCCATGTAATGGTTATGCTTCTCCATATTACAATAAGAAGTGA 912 0.4561 MAGTEATKYASATTSTTNNLAKSNKPIIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAPVNQSIGQSGSNPSSEGLLISTGSDGKHGLSFASLKAKLSKNLQSIMARASDNKSSKSRVSDHFTFASIFHRRSYQIPAMDMKNIEKVVQPSIIVPPVDGDYPAATWESSSMSDCSSEWVGFRQPGLDSDGSDIGEVGVGDQGFLDQLMGWADSNDASGSEGSRSKRFKVSSSVLVPPTFTGSSYDCGSPYSGYASPYNGFASPCNGYASPYYNKK* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1401 303 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Apr10g1401 303 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Apr10g1401 303 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 252 - -
Apr10g1401 303 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Apr10g1401 303 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Apr10g1401 303 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Apr10g1401 303 SUPERFAMILY DNA-binding domain 30 87 IPR016177 GO:0003677
Apr10g1401 303 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Apr10g1401 303 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Apr10g1401 303 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1401 Apr-Chr10 26295693 26296604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1401 30 87 AP2-EREBP Transcription Factor Family AT5G19790 74.138 5.88e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr10g1401 AP2 9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1401 K09286 - gmx:100799444 418.698