Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1400 ATGCAATTGGAATATTCGTGTTTTTATAGCATTATGGATATAAAGGTCGCGAAAAGGACGGAACGATTCGGTGGGACGACGTGTGTGTATTGGCAAGCTGGTAAATGCAACAGAAATCCATGCAGATTTTTGCATGGAGAATCACCACTGCCATCTACTCCTTATCACGATGCCAGAAGGCCCAATACTGCTTATCGTTATTCAAGGAGGCCCCATTTGTCTGAGAACACCTCCAAGAGTAACTCAAAGACAGTATTGATTAGAAAGAGTGCAGATAAAGAAGATGGGACAAGTGTTGCCAAGAGTTCTCAGAAGCCATCACCAGTTATATGTAAATACTGGACAAATGGCAATTGTGTACATGGTGAAAGGTGCCGGAATTTACATTCATGGTTTTATGGTGATGGGTTTTCCACATTGGCAAAGCTTCAAGGCCACAAGAAGGTCATCACCGGGATTGCCCTTCCAGTTGGGTCTGACAAACTTTATTCCGGCAGCACCGATGGGACAGTTCGTATATGGGACTGCCACACTGGTCAATCTGCAAATTTGATAAATCTTGGGGCTGTAGTTAGCTCTTTGATCAGCGAGGGGCCATGGATTTTTGTTGGTGTGCGAAATGCTGTCAAGGCTTGGAATATTCAGACTGCTTCAGAATTTACTCTTGATGGACCTAAAGGACAAGTCCTTGCCATGGTTGTTGGCAATGATACACTTTTTGCTGCAGCAGAGAATGGTATAATTTCTGCATGGAGAGGCAGCTCTAGCTCTGAAGCCACGACCCCTTTTGAACTGGTTGCTTCACTAACTGGCCACACTAAAGCTGTTGTTTGCCTGGCTGTTGGAGGCAAAATGCTGTTCTCAGGGTCCAAGGACCAAAGTATGAAGGTTTGGGACCTTGATACATTACAGTGTAAAATGACACTCAATGAGCATATTGACGTGGTCACATCCCTTATTTGTTGGGACCATTATTTGTTATCAAGTTCATCTGACTGCACAATTAAAATCTGGGTTGCCACTGAAGAGGGAACTTTGAAGGTGACATATACGCACCGAGAGGAAAATGATGTTGTTTCACTTTTTGGGATGACTAATGCAGAAGAGAAGCCAATATTATTTGTCTCATGCATAGACAATTCAGTTCGCATGTATGAATTGCCATCATTTTCAGAGAGAGGTCGTATATTTGCAAAGCGAGAGGTTCGATCAATGGTGTTAGGTCCTGGTGGTCTCTTCTTCACTGGGGATGGTACTGGTTTGCTGAAGGTTTGGAAATGGTTGGAAGAACCCAAGATGGCTTCCTCTTAA 1311 0.4363 MQLEYSCFYSIMDIKVAKRTERFGGTTCVYWQAGKCNRNPCRFLHGESPLPSTPYHDARRPNTAYRYSRRPHLSENTSKSNSKTVLIRKSADKEDGTSVAKSSQKPSPVICKYWTNGNCVHGERCRNLHSWFYGDGFSTLAKLQGHKKVITGIALPVGSDKLYSGSTDGTVRIWDCHTGQSANLINLGAVVSSLISEGPWIFVGVRNAVKAWNIQTASEFTLDGPKGQVLAMVVGNDTLFAAAENGIISAWRGSSSSEATTPFELVASLTGHTKAVVCLAVGGKMLFSGSKDQSMKVWDLDTLQCKMTLNEHIDVVTSLICWDHYLLSSSSDCTIKIWVATEEGTLKVTYTHREENDVVSLFGMTNAEEKPILFVSCIDNSVRMYELPSFSERGRIFAKREVRSMVLGPGGLFFTGDGTGLLKVWKWLEEPKMASS* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1400 436 SMART c3hfinal6 105 131 IPR000571 GO:0046872
Apr10g1400 436 SMART c3hfinal6 22 47 IPR000571 GO:0046872
Apr10g1400 436 Gene3D - 25 126 - -
Apr10g1400 436 SMART WD40_4 215 252 IPR001680 GO:0005515
Apr10g1400 436 SMART WD40_4 262 299 IPR001680 GO:0005515
Apr10g1400 436 SMART WD40_4 343 386 IPR001680 GO:0005515
Apr10g1400 436 SMART WD40_4 302 339 IPR001680 GO:0005515
Apr10g1400 436 SMART WD40_4 389 426 IPR001680 GO:0005515
Apr10g1400 436 SMART WD40_4 136 175 IPR001680 GO:0005515
Apr10g1400 436 ProSiteProfiles Zinc finger C3H1-type profile. 105 132 IPR000571 GO:0046872
Apr10g1400 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 302 - -
Apr10g1400 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Apr10g1400 436 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Apr10g1400 436 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Apr10g1400 436 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Apr10g1400 436 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 19 435 - -
Apr10g1400 436 MobiDBLite consensus disorder prediction 69 85 - -
Apr10g1400 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 308 IPR001680 GO:0005515
Apr10g1400 436 MobiDBLite consensus disorder prediction 67 104 - -
Apr10g1400 436 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Apr10g1400 436 ProSiteProfiles Zinc finger C3H1-type profile. 22 48 IPR000571 GO:0046872
Apr10g1400 436 Pfam WD domain, G-beta repeat 304 338 IPR001680 GO:0005515
Apr10g1400 436 Pfam WD domain, G-beta repeat 264 299 IPR001680 GO:0005515
Apr10g1400 436 Pfam WD domain, G-beta repeat 139 175 IPR001680 GO:0005515
Apr10g1400 436 SUPERFAMILY WD40 repeat-like 107 426 IPR036322 GO:0005515
Apr10g1400 436 Gene3D - 127 260 IPR015943 GO:0005515
Apr10g1400 436 Gene3D - 261 434 IPR015943 GO:0005515
Apr10g1400 436 PANTHER - 19 435 IPR044715 -
Apr10g1400 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1400 Apr-Chr10 26285557 26288268 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1400 99 367 Eukaryotic Initiation Factors Gene Family AT2G46290 24.080 7.06e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr10g1400 WD40 5e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1400 - - aprc:113849178 883.634