Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1399 ATGAGGCCTGTTTTTTGTGGAAACCTGGATTTCGATGCGCGCCAATCTGATGTCGAGAGGCTCTTCAGAAGATACGGCAAGGTTGATAGAGTGGACATGAAATCTGGGTTTGCTTTTGTCTACATGGAAGATGAACGTGATGCTGAGTATGCTATCAGAAGACTTGATAGGACAGAATTTGGCAGAAAGGGACGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGATTCAAGAAAATCATCAACTAATTCAAGACCATCCAAGACATTGTTTGTTATAAATTTTGATCCAGTTCACACCAGGACAAGGGATCTGGAGAGACATTTTGATCCCTTTGGGAAAATATTGAATATAAGGATCAGGAGGAATTTTGCTTTCATTCAGTATGAATCCCAGGAGGATGCTACTAGAGCTTTGGATGCAACAAACCTGAGCAAGTTTATGGATCGTGTTATCACAGTGGAGTATGCTATAAGAGATGATGACGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGTCATGACTCCCCTGATGGGAGGTATGGTCGTGGAAGATCCCCAAGTCCATATCGAAGAGGTAGGGGTAGCCCAGATTATGGTCGTGGATCAAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATAAATGGAAGATATGATAGCCGGTCTCCTCCACCCCGAGACAGGTCGCGATCCTGA 750 0.4493 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRKSSTNSRPSKTLFVINFDPVHTRTRDLERHFDPFGKILNIRIRRNFAFIQYESQEDATRALDATNLSKFMDRVITVEYAIRDDDDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPSSRPEPRGSPKYERAESPINGRYDSRSPPPRDRSRS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1399 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Apr10g1399 249 SMART rrm1_1 96 162 IPR000504 GO:0003723
Apr10g1399 249 SMART rrm1_1 3 70 IPR000504 GO:0003723
Apr10g1399 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Apr10g1399 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Apr10g1399 249 MobiDBLite consensus disorder prediction 72 86 - -
Apr10g1399 249 MobiDBLite consensus disorder prediction 169 189 - -
Apr10g1399 249 MobiDBLite consensus disorder prediction 220 249 - -
Apr10g1399 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Apr10g1399 249 Gene3D - 1 77 IPR012677 -
Apr10g1399 249 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 210 - -
Apr10g1399 249 PANTHER - 4 210 - -
Apr10g1399 249 Gene3D - 78 229 IPR012677 -
Apr10g1399 249 MobiDBLite consensus disorder prediction 169 249 - -
Apr10g1399 249 MobiDBLite consensus disorder prediction 72 92 - -
Apr10g1399 249 SUPERFAMILY RNA-binding domain, RBD 2 168 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1399 Apr-Chr10 26272896 26276230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1399 4 169 Eukaryotic Initiation Factors Gene Family AT1G49760 24.590 2.44e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1399 K12893 - gmx:100797778 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1399 10 26272896 26276230 Apr10g1399 10 26272896 26276230 ECH