Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1397 ATGGATATAAAGGTCGCGAAAAGGACGGAACGATGTGGTGTGACGACGTGTGTGTATTGGCAAGCTGGTAAATGCAACAGAAATCCATGCAGATTTTTGCACGGAGAATCACCACTGCCATCTACACCTTATCACGATGCCAGAAGGCCCAATACTGCTTATCGTTATTCAAGGAGGCCCCATTTGTCTGAGAACACCTCCAAGTGTAACTCAAAGACAGTATTGATTAGAAAGAGTGCAGATAAAGAAGATGGGACAAGTGTTGCCAAGAGTTCTCAGAAGCCATCACCAATTATATGTAAATACTGGATAAATGGCAATTGTGTACATGGTGAACGGTGCCGGAATTTACATTCATGGTTTTATGGTGATGGGTTTTCCACATTGGCAAAGCTTCAAGGCCACAAGAAGGTCATCACTGGGATTGCCCTTCCAGTTGGGTCTGACAAACTTTATTCCGGCAGCACTGATGGGACAGTTCGTATATGGGACTGCCACAATGGTCTATCTGCAAATGTGATAAATCTTGGGGCTGAAGTTACCTCTTTGATCAGCGAGGGGCCATGGATTTTTGTTGGTGTGCGAAATGCTGTCAAGGCTTGGAATATTCAGACTGCTTCAGAATTTACTCTTGATGGACCTAAAGGACAAGTCCTTGCCATGGTTGTTGGCAATGATACACTTTTTGCTGCAGCAGAGAATGGTGAAATTTCTGCTTGGAGAGGCAGCTCTAGCTCTGAAGCCACGACCCCTTTTGACCCAGTTGCTTCACTAACTGGCCACACTAAAGCTGTTGTTTGCCTGGCTGTTGGAGGCAAAATGCTGTTCTCAGGGTCCAAGGACCAAAGTATAAAGGTTTGGGACCTTGATACATTACAGTGTAAAATGACACTCAATGAGCATACTGACGTGGTCACATCCCTTATTTGTTGGGACCATTATTTGTTATCAAGTTCATCTGACTGCACAGTTAAAATCTGGGTTGCCACTGAAGAGGGAACTTTGAAGGTGACATATACGCACCGAGAGGAAAATGGTGTTGTTTCACTCTTTGGGATGCCTAATGCAGAAGAGAAGCCAATATTATTTGTCTCGTGCAGAGACAATTCAGTTCGCATGTATGAGTTGCCATCATTTTCAGAGAGGGGTCGATTATTTGCAAAGCGAGAGGTTCGATCAATGGAGTTAGGTCCCGGTGGTCTCTTCTTCACTGGTGACGGGACTGGTTTGCTGACGGTTTGGAAATGGTTGGAAGAATCCAAGATGGCTTCCTCTTAA 1278 0.4476 MDIKVAKRTERCGVTTCVYWQAGKCNRNPCRFLHGESPLPSTPYHDARRPNTAYRYSRRPHLSENTSKCNSKTVLIRKSADKEDGTSVAKSSQKPSPIICKYWINGNCVHGERCRNLHSWFYGDGFSTLAKLQGHKKVITGIALPVGSDKLYSGSTDGTVRIWDCHNGLSANVINLGAEVTSLISEGPWIFVGVRNAVKAWNIQTASEFTLDGPKGQVLAMVVGNDTLFAAAENGEISAWRGSSSSEATTPFDPVASLTGHTKAVVCLAVGGKMLFSGSKDQSIKVWDLDTLQCKMTLNEHTDVVTSLICWDHYLLSSSSDCTVKIWVATEEGTLKVTYTHREENGVVSLFGMPNAEEKPILFVSCRDNSVRMYELPSFSERGRLFAKREVRSMELGPGGLFFTGDGTGLLTVWKWLEESKMASS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1397 425 SMART WD40_4 251 288 IPR001680 GO:0005515
Apr10g1397 425 SMART WD40_4 334 375 IPR001680 GO:0005515
Apr10g1397 425 SMART WD40_4 378 415 IPR001680 GO:0005515
Apr10g1397 425 SMART WD40_4 291 328 IPR001680 GO:0005515
Apr10g1397 425 SMART WD40_4 125 164 IPR001680 GO:0005515
Apr10g1397 425 SMART WD40_4 204 241 IPR001680 GO:0005515
Apr10g1397 425 PANTHER - 9 424 IPR044715 -
Apr10g1397 425 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Apr10g1397 425 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Apr10g1397 425 PRINTS G protein beta WD-40 repeat signature 315 329 IPR020472 -
Apr10g1397 425 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Apr10g1397 425 ProSiteProfiles Zinc finger C3H1-type profile. 94 121 IPR000571 GO:0046872
Apr10g1397 425 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 9 424 - -
Apr10g1397 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 291 - -
Apr10g1397 425 Pfam WD domain, G-beta repeat 253 288 IPR001680 GO:0005515
Apr10g1397 425 Pfam WD domain, G-beta repeat 128 164 IPR001680 GO:0005515
Apr10g1397 425 Pfam WD domain, G-beta repeat 293 327 IPR001680 GO:0005515
Apr10g1397 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 164 IPR001680 GO:0005515
Apr10g1397 425 SMART c3hfinal6 94 120 IPR000571 GO:0046872
Apr10g1397 425 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Apr10g1397 425 Gene3D - 13 115 - -
Apr10g1397 425 SUPERFAMILY WD40 repeat-like 97 415 IPR036322 GO:0005515
Apr10g1397 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 297 IPR001680 GO:0005515
Apr10g1397 425 ProSitePatterns Trp-Asp (WD) repeats signature. 275 289 IPR019775 -
Apr10g1397 425 Gene3D - 116 249 IPR015943 GO:0005515
Apr10g1397 425 Gene3D - 250 424 IPR015943 GO:0005515
Apr10g1397 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1397 Apr-Chr10 26257251 26259187 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1397 88 356 Eukaryotic Initiation Factors Gene Family AT2G46290 24.080 1.43e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1397 - - aprc:113849178 813.527