Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1387 ATGAGTTTTGGGGGGTTCTTAGACAACAACACAGGTAGTGGAGGTGCGAGAAACGTTTCAGATATTGCTTACAACAACGTTACCACTACCCACCACAACAACAACAACGATAGAATGCCCTTTGCTGCAATCTCTCAGCCACGCTTAGTGACTACTACTCCCACTTTGGCTAAATCCATGTTCCACTCTCCAGGGCTATCTCTGGCACTTCAAACCAATGTTGATGGGCAAGAGGATGTGAATAGAATGGCTGAGAATAGTTTTGAGCCTAATGGTTTGAGAAGAAGCAGAGAAGAAGAGCACGAAAGCAGATCTGGCAGCGATAACATGGATGGTGCTTCAGGTGATGAACACGATGCTGCCGACAATCCTCCAAGAAAAAAACGCTATCACCGACACACTCCTCAGCAAATTCAAGAGCTTGAAGCGTTGTTCAAGGAGTGTCCTCATCCAGATGAGAAACAAAGGTTAGAATTGAGCAGAAGGCTTTGCTTGGAAACGAGGCAAGTGAAGTTTTGGTTCCAAAATCGGAGAACCCAAATGAAGACCCAATTGGAGCGCCACGAGAACACACTTCTTAGGCAAGAGAACGACAAGCTTAGAGCAGAGAACATGTCCATTAGGGATGCAATGAGGAACCCCATGTGTTCCAATTGCGGGGGTCCAGCTATTATTGGTGAGATTTCACTAGAGGAACAGCATCTTAGGATTGAGAATGCAAGGTTGAAAGACGAACTTGACCGAGTTTGTGCTCTTGCGGGCAAGTTTTTGGGTCGCCCCATTTCTTCATTGGCAAACTCAATTGCTCCTCCGTTGCCTAACTCAAGTTTGGAGCTTGGAGTTGGGGGCAATGGTTTTGGTGGGATCAACACTGTGCCTTCAACATTGCCTGATTTCACAGTGGGAATGTCTAATCCTCTAGCCATGGTGTCTCCTACAAGTACTAGACCAATGACTGTGGTGGCTGGCTTTGATAGATCAATGGAGAGGTCTATGTTTCTTGAGCTTGCTTTGGCTGCTATGGATGAGTTGGTGAAGATGGCACAAACGGGTGAGCCTCTTTGGATCAGGAATATTGAAGGTGGAAGAGACATTTTGAACCATGAGGAATACATGAGGACATTCACTCCTTGCATTGGGTTGAGACCCAATGGTTTTGTATCCGAGGCTACCAGAGAAAATGGAATGGTCATCATAAACAGCTTAGCTCTTGTTGAGACCCTTATGGACTCGAATCGATGGGCAGAGATGTTTCCTTGCATCATTGCTAGATCTTCCACCACTGAAGTGATATCTAATGGAATAAACGGAACCAGAAATGGTGCACTTCAACTAATGCATGCTGAACTTCAAGTTCTTTCGGCTTTGGTTCCGGTTCGTGAGGTGAATTTCCTTCGGTTTTGCAAGCAGCACGCAGAAGGGGTATGGGCTGTGGTAGATGTGTCCATAGATACCATCAGAGAAAGTTCGGGTGCACCAAGTTTTGTCAACTGCAGAAGGCTTCCTTCTGGATGTGTGGTGCAAGATATGCCTAATGGGTACTCAAAGGTGACATGGGTGGAGCATGCAGAATACGATGAGAGCCAAGTCCACCAGATGTATAGATCGTTGTTGAGCTCAGGAATGGGGTTCGGTGCACAACGTTGGGTGGCTACCCTACAACGCCAATGCGAGTGTCTCGCCATCTTAATGTCCTCTGCAGCACCCTCGCGAGACCATTCCGCAATAACAGCGGGTGGGAGGCGTAGCATGCTGAAGTTAGCGCAACGCATGACGAACAATTTCTGTGCGGGGGTGTGTGCGTCGACGGTGCACAAATGGAACAAACTCAACGCCGGCAACGTCGACGAAGACGTCAGGGTTATGACGCGGAAGAGCGTCGACGATCCCGGCGAGCCACCTGGCATTGTTCTCAGCGCAGCCACCTCTGTGTGGCTACCCGTTTCACCCCAAAGACTCTTCGATTTCCTTCGCGACGAGACCCTCCGAAGCGAGTGGGACATACTCTCCAATGGTGGTCCCATGCAAGAGATGGCCCACATCGCCAAGGGCCAAGACCATGGCAACTGCGTCTCTCTCCTGCGAGCCAGTGCGATGAATTCGAACCAGAGTAGCATGCTGATACTGCAGGAAACATGTATAGACGCGGCAGGGTCGCTCGTGGTGTACGCGCCGGTGGATATTCCGGCCATGCACGTGGTCATGAACGGTGGTGATTCGGCTTACGTGGCATTGCTTCCTTCAGGGTTTGCCATTGTCCCTGATGGGCCCGGGTCACGTGGGCCGCAGAACGGGCCCACAACAACCACAAACGGCGGTGACAACAGTGGTGGGGCGGGTGTAAGTGGGTCCCTTCTAACGGTGGCGTTTCAGATCCTTGTGAATAGTCTTCCAACGGCCAAGCTCACGGTAGAGTCGGTGGAAACCGTGAACAACCTCATCTCCTGCACAGTTCAGAAGATCAAAGCCGCGCTTCAATGTGAAAGTTAA 2490 0.4988 MSFGGFLDNNTGSGGARNVSDIAYNNVTTTHHNNNNDRMPFAAISQPRLVTTTPTLAKSMFHSPGLSLALQTNVDGQEDVNRMAENSFEPNGLRRSREEEHESRSGSDNMDGASGDEHDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPNSSLELGVGGNGFGGINTVPSTLPDFTVGMSNPLAMVSPTSTRPMTVVAGFDRSMERSMFLELALAAMDELVKMAQTGEPLWIRNIEGGRDILNHEEYMRTFTPCIGLRPNGFVSEATRENGMVIINSLALVETLMDSNRWAEMFPCIIARSSTTEVISNGINGTRNGALQLMHAELQVLSALVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRESSGAPSFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQMYRSLLSSGMGFGAQRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDETLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPQNGPTTTTNGGDNSGGAGVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1387 829 MobiDBLite consensus disorder prediction 91 126 - -
Apr10g1387 829 ProSiteProfiles START domain profile. 326 562 IPR002913 GO:0008289
Apr10g1387 829 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Apr10g1387 829 SMART HOX_1 125 188 IPR001356 GO:0003677
Apr10g1387 829 CDD START_ArGLABRA2_like 330 558 - -
Apr10g1387 829 SMART START_1 335 559 IPR002913 GO:0008289
Apr10g1387 829 Gene3D - 113 200 - -
Apr10g1387 829 Coils Coil 178 210 - -
Apr10g1387 829 Pfam Homeodomain 127 182 IPR001356 GO:0003677
Apr10g1387 829 CDD homeodomain 126 184 IPR001356 GO:0003677
Apr10g1387 829 SUPERFAMILY Homeodomain-like 110 184 IPR009057 -
Apr10g1387 829 SUPERFAMILY Bet v1-like 587 822 - -
Apr10g1387 829 SUPERFAMILY Bet v1-like 327 559 - -
Apr10g1387 829 Pfam START domain 335 559 IPR002913 GO:0008289
Apr10g1387 829 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 71 826 IPR042160 -
Apr10g1387 829 Gene3D - 400 557 IPR023393 -
Apr10g1387 829 MobiDBLite consensus disorder prediction 84 134 - -
Apr10g1387 829 MobiDBLite consensus disorder prediction 761 777 - -
Apr10g1387 829 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 71 826 - -
Apr10g1387 829 MobiDBLite consensus disorder prediction 755 777 - -
Apr10g1387 829 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1387 Apr-Chr10 26093036 26100588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1387 1 829 Homeobox Transcription Factor Family AT3G61150 64.209 0.0 1042
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr10g1387 START 3.9e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1387 K09338 - gmx:100811873 1420.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1387 10 26093036 26100588 Apr10g1387 10 26093036 26100588 ECH
Apr10g1387 10 26093036 26100588 Apr4g2175 4 30838107 30844208 ECH