Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1373 ATGGAAGAAGCAGAAGTAGGAGTTGCAGCAACAGCCTCTTCACAGAGAAAGCCAAAGAGGAAACGAGCCGTAGCACCGCGTGATCCTGAACTCGACCGTCTCAACTTGCTTCCATGGAACCCCGCTCTTCCTCAACACGACAACGACGACGACGACACCTTCTCCTTGTTCATTGGCTCCAACGAACTCGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGATGAGGCTGAATATGGTTTGAATATTCCTCAACCTGAAGATGACAAGAGGAAGAAGAAGAAGTCTAAAGAGGACGGAAATGTGAAGAAAAAGCAACAAGATGGAGTTGATGGTGTTTGTAGTGATGTGGCCGAAGCGCAGTTGGATGAGAGTATGGAATTAAAAGAGAAGAAAAAGAAGAAGAAGAAGAAGAAAAAGAAGGATGCTGGTGAAAACCAGAAAGTTGAGAAGTTAGATGCAGATACTGATGTGAAGGGTGATGATATTGGGGAAGAGGACATCGATGAAACTGAATTTTATGCATGGAACGAGTTGAGGCTTCATCCTCTCCTAATGAAAGCAATAAGCAAGCTTGGCTTCAAGGAACCAACACCGATACAGAAGGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTCGGGGCTGCTGAGACTGGATCTGGTAAAACCCTTGCATTTGGTTTGCCCATTTTGCAACGCATTTTGGAGGAGAGAGAGAAGGCTGCAAAAATTACTGAAGAAAGGGGTGACGAACCTGAAAAGTATGCTCCTACAGGCCTTTTAAGGGCTCTTATTATTGCTCCCACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCTATAGCCAAGAATATTAATGTTAGGGTGACCCCTATAGTTGGGGGAATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAGGCCTGAGATTGTGGTTGGCACTCCAGGGAGGTTATGGGAACTTATGTCAGGTGGAGAGAAACATCTAGTTGAGTTACATTCATTGTCTTTCTTTGTACTTGATGAGGCTGATCGAATGGTACAAAATGGTCATTTTAAGGAGTTGCAGTCTATAATTGACATGCTTCCCATGTCCAACATCTCCACTGAAGATAAATCTCAATATGCACAAAATTGTGTTACAGTTTCTAGTTACCAAAGAAAAAAAAGGCAAACTCTTGTTTTTTCTGCAACTGTTGCGCTGTCTGCTGATTTTCGCAAGAAGCTAAAGCGTGGTTCAATACAACAGAAGCAATCATCGGCAGATGGATTGAATTCTATTGAAACTCTTTCTGAGCGAGCAGGAATGAGATCCAATGCTGCAATTATTGATCTTACTAATCCATCAATATTAGCAGCTAAGCTTGAGGAATCATTTATTGAATGCAGGGAAGAAGATAAAGATGCCTATTTGTATTATATTTTGACTGTCCATGGACATGGCCGCACAATAGTTTTCTGTACATCAATTGCAGCTTTACGGCATATTTCTTCCATACTGCGCATTCTTGGCATCAATGTTTGGACTCTTCATGCCCAAATGCAGCAGCGTGCACGTTTGAAGGCCATTGATCGCTTTCGTGAAAATGAAAATGACATACTTGTTGCTACAGATGTTGCTGCCAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAACTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCTGAAGGTTGTAGTATTGCTTTAATCTCACCAAGAGATACGTCAAAGTTTGCTTCATTGTGCAAGTCATTTTCTAAGGATACCTTTCAGCGGTTTCCTTTAGAGAACTCATACATGCCAGAGGTCCTAAAACGATTGTCTCTTGCACGTCAAATAGACAAAATAACAAGGAAGGATTCCCAGGAAAAGGCTGAGAAAACATGGTTTGATCGGAATGCTAACTCAGTGGAACTAGTTACAGAAAATTATGACAGTGAGGAGGAACAAATGAACAAATATAAACAAATGAAAGCCAGCTCTAGACAATTGAAGAAATTGCAGGAGGAGCTCAATGTGCTGATTTCTCGTCCGTTACAATCAAAAACATTTTCGCATCGATATTTAGCAGGGGCTGGTGTCACACCCCTCATGCAGGAACAACTGCAACAATTAGCAAGGCAAAAATTAAGTGGTCACCAAGGTTCAGGACTGGGCAAAAAAGGAAAATTGGTTGTGATTGGTCAAGATTGTGTGGAAGCACTTCAGGCACTACGAAATGCTGGTGAAGAGGTGCGAATGGATGTCAAGGATATGAAAGGAAAACAGAGAAATATAGATAATTTGAAAAGAAAGAGAAAAGAGGAGAAGAAACGTTTGCGTGATCAGCGTAGAAAGCAGAAGAGAAAGCTAAAACATGAGAATGAATAA 2427 0.4182 MEEAEVGVAATASSQRKPKRKRAVAPRDPELDRLNLLPWNPALPQHDNDDDDTFSLFIGSNELEGGFLSLEEIDEAEYGLNIPQPEDDKRKKKKSKEDGNVKKKQQDGVDGVCSDVAEAQLDESMELKEKKKKKKKKKKKDAGENQKVEKLDADTDVKGDDIGEEDIDETEFYAWNELRLHPLLMKAISKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKAAKITEERGDEPEKYAPTGLLRALIIAPTRELALQVTDHLKAIAKNINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSGGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISTEDKSQYAQNCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGSIQQKQSSADGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGHGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAIDRFRENENDILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPRDTSKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQEKAEKTWFDRNANSVELVTENYDSEEEQMNKYKQMKASSRQLKKLQEELNVLISRPLQSKTFSHRYLAGAGVTPLMQEQLQQLARQKLSGHQGSGLGKKGKLVVIGQDCVEALQALRNAGEEVRMDVKDMKGKQRNIDNLKRKRKEEKKRLRDQRRKQKRKLKHENE* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1373 808 MobiDBLite consensus disorder prediction 78 110 - -
Apr10g1373 808 MobiDBLite consensus disorder prediction 1 52 - -
Apr10g1373 808 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 459 620 IPR001650 -
Apr10g1373 808 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 422 IPR014001 -
Apr10g1373 808 Coils Coil 771 808 - -
Apr10g1373 808 MobiDBLite consensus disorder prediction 128 152 - -
Apr10g1373 808 SMART helicmild6 499 580 IPR001650 -
Apr10g1373 808 Gene3D - 457 699 IPR027417 -
Apr10g1373 808 SMART ultradead3 192 432 IPR014001 -
Apr10g1373 808 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 173 201 IPR014014 GO:0003724
Apr10g1373 808 Coils Coil 117 145 - -
Apr10g1373 808 MobiDBLite consensus disorder prediction 768 808 - -
Apr10g1373 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 368 IPR027417 -
Apr10g1373 808 Pfam DEAD/DEAH box helicase 197 405 IPR011545 GO:0003676|GO:0005524
Apr10g1373 808 Gene3D - 127 418 IPR027417 -
Apr10g1373 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 595 IPR027417 -
Apr10g1373 808 MobiDBLite consensus disorder prediction 82 109 - -
Apr10g1373 808 Coils Coil 656 696 - -
Apr10g1373 808 CDD SF2_C_DEAD 460 589 - -
Apr10g1373 808 Pfam Helicase conserved C-terminal domain 471 579 IPR001650 -
Apr10g1373 808 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 344 352 IPR000629 -
Apr10g1373 808 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 88 728 - -
Apr10g1373 808 MobiDBLite consensus disorder prediction 768 785 - -
Apr10g1373 808 CDD DEADc_DDX24 184 449 - -
Apr10g1373 808 PANTHER RNA HELICASE 88 728 - -
Apr10g1373 808 MobiDBLite consensus disorder prediction 786 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1373 Apr-Chr10 25981845 25991600 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1373 174 620 Eukaryotic Initiation Factors Gene Family AT5G11200 27.966 2.79e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1373 K14805 - gmx:100806018 1277.69