Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1357 ATGTCATTCACAGGAACCCTTGATAAATGCGCAGCATGTGATAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGTATTCCTTATCACAAAAATTGCTTCAAATGCAGCCATTGCAAGGGATATCTTACGATGAGCACATACTCCTCAATGGATGGAGTTCTCTATTGCAAGCCACATTTTGAACAGCTTTTCAAGGAATCAGGCAATTTCAGCAAGAACTTTCAAACTGCAAAGTCTTCTGAGAAACAAAACGAGCTGAATAGGGCCCCGAGTAGGGTATCTTCTATGTTCAGTGGAACCCTGGACAAATGTGCAGTTTGCTCAAAAACAGTCTACCCACTGGAAAAGGTGACACTGGAAGGAGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAGCTATGCTGCTCTTGATGGTGTCCTCTACTGTAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGGAACTATAGCCATGTCCTTCAAGCTGCTGCACACAAGAGGACTGGTTCCTCTACACCTCCTGAGCCAATTGAGGAGCCATCACATCCACCACCAGCTGATGATGAGGACCAAAAAGAAGACACCTCTTGA 627 0.445 MSFTGTLDKCAACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSEKQNELNRAPSRVSSMFSGTLDKCAVCSKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRVHFAQLFMEKGNYSHVLQAAAHKRTGSSTPPEPIEEPSHPPPADDEDQKEDTS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1357 208 SMART lim_4 9 61 IPR001781 -
Apr10g1357 208 SMART lim_4 105 157 IPR001781 -
Apr10g1357 208 PANTHER OS06G0237300 PROTEIN 1 207 IPR045268 GO:0051015
Apr10g1357 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Apr10g1357 208 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Apr10g1357 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Apr10g1357 208 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Apr10g1357 208 MobiDBLite consensus disorder prediction 176 208 - -
Apr10g1357 208 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Apr10g1357 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Apr10g1357 208 Gene3D Cysteine Rich Protein 5 72 - -
Apr10g1357 208 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 207 - -
Apr10g1357 208 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Apr10g1357 208 Gene3D Cysteine Rich Protein 102 170 - -
Apr10g1357 208 Pfam LIM domain 10 65 IPR001781 -
Apr10g1357 208 Pfam LIM domain 106 161 IPR001781 -
Apr10g1357 208 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1357 Apr-Chr10 25882243 25884268 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Apr10g1357 LIM 3.9e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1357 - K09377 gmx:100800234 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1357 10 25882243 25884268 Apr10g1357 10 25882243 25884268 ECH
Apr4g2215 4 31176570 31178357 Apr10g1357 10 25882243 25884268 PCT