LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g1350	ATGAACAACAATAGAGCGAGGTACCCACCTGGAATGGGTATTGGACGACCGGGTTTTAACCCGAACCCGAATCCAAATCCGAATCACCCTTTTCAGGCAAGGCCACCGTACCAGCAACAACCGCACCAACAGCAATATGTGCAGAGGCATTTGGTGCAACAGCCACAACAACAACAACAGTGGCTGAGGAGGGACTCCAACGTTGTTGACGAGGTCGAGAAGACCGTGCAGTCTGAAGCCGTTGACCCAAGTTCACAAGATTGGAAAGCAAGACTAAAGATTCCACCACCTGATACGCGCTATAGGACAGAGGATGTAACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTTCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCCCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCCAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGACAATAATGTTATTCAAGTTGTTATTCTGGTCCCAACCCGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGGAAGCATTTGAAAATTCAAGTTATGGTTACCACAGGTGGTACCAGCCTAAAAGATGATATTATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCTAAGAAGGGTGTTTGTATTTTGAAAGATTGCTCTATGCTTGTCATGGATGAGGCTGATAAGCTTCTGTCCCCAGAGTTCCAACCTTCTGTAGAGCAGTTGATTCATTTTCTTCCTAGAACCCGTCAAATCCTGATGTTTTCAGCTACATTTCCTGTCACTGTAAAGGACTTCAAAGATAGGTATCTTCAGAAACCTTATGTCATCAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAAAAAGTCCACTGTCTAAATACTCTATTTTCTAAGCTGCAAATAAATCAGTCTATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCAAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATACATGCAAAGATGTTGCAAGATCATCGTAATAGAGTATTTCATGACTTCCGGAATGGTGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATTCAAGCAGTTAATGTTGTTATTAATTTTGATTTCCCGAAGAACTCAGAGACTTATTTGCATAGGGTTGGTCGATCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACCTGATTACCTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAAATTCCTCCGCACATTGATCAGGCAATTTATTGCCGGTGA	1461	0.4114	MNNNRARYPPGMGIGRPGFNPNPNPNPNHPFQARPPYQQQPHQQQYVQRHLVQQPQQQQQWLRRDSNVVDEVEKTVQSEAVDPSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIHFLPRTRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR*	487

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g1350	486	MobiDBLite	consensus disorder prediction	1	47	-	-
	Apr10g1350	486	CDD	DEADc_DDX6	114	314	-	-
	Apr10g1350	486	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	182	466	IPR027417	-
	Apr10g1350	486	Pfam	Helicase conserved C-terminal domain	338	444	IPR001650	-
	Apr10g1350	486	MobiDBLite	consensus disorder prediction	20	34	-	-
	Apr10g1350	486	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	323	483	IPR001650	-
	Apr10g1350	486	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	20	486	-	-
	Apr10g1350	486	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 12	20	486	-	-
	Apr10g1350	486	CDD	SF2_C_DEAD	324	453	-	-
	Apr10g1350	486	SMART	helicmild6	363	444	IPR001650	-
	Apr10g1350	486	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	143	313	IPR014001	-
	Apr10g1350	486	SMART	ultradead3	131	327	IPR014001	-
	Apr10g1350	486	Gene3D	-	317	486	IPR027417	-
	Apr10g1350	486	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	112	140	IPR014014	GO:0003724
	Apr10g1350	486	MobiDBLite	consensus disorder prediction	76	96	-	-
	Apr10g1350	486	Gene3D	-	53	316	IPR027417	-
	Apr10g1350	486	Pfam	DEAD/DEAH box helicase	137	301	IPR011545	GO:0003676\|GO:0005524
	Apr10g1350	486	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	259	267	IPR000629	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g1350	Apr-Chr10	25821747	25832070	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g1350	112	483	Eukaryotic Initiation Factors Gene Family	AT3G19760	37.968	9.38e-94	288

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g1350	K12614		-	gmx:100801402	874.389