Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr10g1350 | ATGAACAACAATAGAGCGAGGTACCCACCTGGAATGGGTATTGGACGACCGGGTTTTAACCCGAACCCGAATCCAAATCCGAATCACCCTTTTCAGGCAAGGCCACCGTACCAGCAACAACCGCACCAACAGCAATATGTGCAGAGGCATTTGGTGCAACAGCCACAACAACAACAACAGTGGCTGAGGAGGGACTCCAACGTTGTTGACGAGGTCGAGAAGACCGTGCAGTCTGAAGCCGTTGACCCAAGTTCACAAGATTGGAAAGCAAGACTAAAGATTCCACCACCTGATACGCGCTATAGGACAGAGGATGTAACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTTCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCCCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCCAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGACAATAATGTTATTCAAGTTGTTATTCTGGTCCCAACCCGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGGAAGCATTTGAAAATTCAAGTTATGGTTACCACAGGTGGTACCAGCCTAAAAGATGATATTATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCTAAGAAGGGTGTTTGTATTTTGAAAGATTGCTCTATGCTTGTCATGGATGAGGCTGATAAGCTTCTGTCCCCAGAGTTCCAACCTTCTGTAGAGCAGTTGATTCATTTTCTTCCTAGAACCCGTCAAATCCTGATGTTTTCAGCTACATTTCCTGTCACTGTAAAGGACTTCAAAGATAGGTATCTTCAGAAACCTTATGTCATCAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAAAAAGTCCACTGTCTAAATACTCTATTTTCTAAGCTGCAAATAAATCAGTCTATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCAAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATACATGCAAAGATGTTGCAAGATCATCGTAATAGAGTATTTCATGACTTCCGGAATGGTGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATTCAAGCAGTTAATGTTGTTATTAATTTTGATTTCCCGAAGAACTCAGAGACTTATTTGCATAGGGTTGGTCGATCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACCTGATTACCTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAAATTCCTCCGCACATTGATCAGGCAATTTATTGCCGGTGA | 1461 | 0.4114 | MNNNRARYPPGMGIGRPGFNPNPNPNPNHPFQARPPYQQQPHQQQYVQRHLVQQPQQQQQWLRRDSNVVDEVEKTVQSEAVDPSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIHFLPRTRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* | 487 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr10g1350 | 486 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Apr10g1350 | 486 | CDD | DEADc_DDX6 | 114 | 314 | - | - | |
Apr10g1350 | 486 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 182 | 466 | IPR027417 | - | |
Apr10g1350 | 486 | Pfam | Helicase conserved C-terminal domain | 338 | 444 | IPR001650 | - | |
Apr10g1350 | 486 | MobiDBLite | consensus disorder prediction | 20 | 34 | - | - | |
Apr10g1350 | 486 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 323 | 483 | IPR001650 | - | |
Apr10g1350 | 486 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 20 | 486 | - | - | |
Apr10g1350 | 486 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 | 20 | 486 | - | - | |
Apr10g1350 | 486 | CDD | SF2_C_DEAD | 324 | 453 | - | - | |
Apr10g1350 | 486 | SMART | helicmild6 | 363 | 444 | IPR001650 | - | |
Apr10g1350 | 486 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 143 | 313 | IPR014001 | - | |
Apr10g1350 | 486 | SMART | ultradead3 | 131 | 327 | IPR014001 | - | |
Apr10g1350 | 486 | Gene3D | - | 317 | 486 | IPR027417 | - | |
Apr10g1350 | 486 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 112 | 140 | IPR014014 | GO:0003724 | |
Apr10g1350 | 486 | MobiDBLite | consensus disorder prediction | 76 | 96 | - | - | |
Apr10g1350 | 486 | Gene3D | - | 53 | 316 | IPR027417 | - | |
Apr10g1350 | 486 | Pfam | DEAD/DEAH box helicase | 137 | 301 | IPR011545 | GO:0003676|GO:0005524 | |
Apr10g1350 | 486 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 259 | 267 | IPR000629 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr10g1350 | Apr-Chr10 | 25821747 | 25832070 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr10g1350 | 112 | 483 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 37.968 | 9.38e-94 | 288 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr10g1350 | K12614 | - | gmx:100801402 | 874.389 |