Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1350 ATGAACAACAATAGAGCGAGGTACCCACCTGGAATGGGTATTGGACGACCGGGTTTTAACCCGAACCCGAATCCAAATCCGAATCACCCTTTTCAGGCAAGGCCACCGTACCAGCAACAACCGCACCAACAGCAATATGTGCAGAGGCATTTGGTGCAACAGCCACAACAACAACAACAGTGGCTGAGGAGGGACTCCAACGTTGTTGACGAGGTCGAGAAGACCGTGCAGTCTGAAGCCGTTGACCCAAGTTCACAAGATTGGAAAGCAAGACTAAAGATTCCACCACCTGATACGCGCTATAGGACAGAGGATGTAACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTTCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCCCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCCAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGACAATAATGTTATTCAAGTTGTTATTCTGGTCCCAACCCGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGGAAGCATTTGAAAATTCAAGTTATGGTTACCACAGGTGGTACCAGCCTAAAAGATGATATTATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCTAAGAAGGGTGTTTGTATTTTGAAAGATTGCTCTATGCTTGTCATGGATGAGGCTGATAAGCTTCTGTCCCCAGAGTTCCAACCTTCTGTAGAGCAGTTGATTCATTTTCTTCCTAGAACCCGTCAAATCCTGATGTTTTCAGCTACATTTCCTGTCACTGTAAAGGACTTCAAAGATAGGTATCTTCAGAAACCTTATGTCATCAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAAAAAGTCCACTGTCTAAATACTCTATTTTCTAAGCTGCAAATAAATCAGTCTATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCAAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATACATGCAAAGATGTTGCAAGATCATCGTAATAGAGTATTTCATGACTTCCGGAATGGTGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATTCAAGCAGTTAATGTTGTTATTAATTTTGATTTCCCGAAGAACTCAGAGACTTATTTGCATAGGGTTGGTCGATCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACCTGATTACCTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAAATTCCTCCGCACATTGATCAGGCAATTTATTGCCGGTGA 1461 0.4114 MNNNRARYPPGMGIGRPGFNPNPNPNPNHPFQARPPYQQQPHQQQYVQRHLVQQPQQQQQWLRRDSNVVDEVEKTVQSEAVDPSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIHFLPRTRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* 487
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1350 486 MobiDBLite consensus disorder prediction 1 47 - -
Apr10g1350 486 CDD DEADc_DDX6 114 314 - -
Apr10g1350 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 466 IPR027417 -
Apr10g1350 486 Pfam Helicase conserved C-terminal domain 338 444 IPR001650 -
Apr10g1350 486 MobiDBLite consensus disorder prediction 20 34 - -
Apr10g1350 486 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 483 IPR001650 -
Apr10g1350 486 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 20 486 - -
Apr10g1350 486 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 20 486 - -
Apr10g1350 486 CDD SF2_C_DEAD 324 453 - -
Apr10g1350 486 SMART helicmild6 363 444 IPR001650 -
Apr10g1350 486 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 313 IPR014001 -
Apr10g1350 486 SMART ultradead3 131 327 IPR014001 -
Apr10g1350 486 Gene3D - 317 486 IPR027417 -
Apr10g1350 486 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 112 140 IPR014014 GO:0003724
Apr10g1350 486 MobiDBLite consensus disorder prediction 76 96 - -
Apr10g1350 486 Gene3D - 53 316 IPR027417 -
Apr10g1350 486 Pfam DEAD/DEAH box helicase 137 301 IPR011545 GO:0003676|GO:0005524
Apr10g1350 486 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Apr10g1350 Apr-Chr10 25821747 25832070 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1350 112 483 Eukaryotic Initiation Factors Gene Family AT3G19760 37.968 9.38e-94 288
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1350 K12614 - gmx:100801402 874.389