Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1345 ATGGATCGAGGAGATCAAATGGCATTATCTGGTTCTGCATCTTACTATATGCAGAGAGGAATACCTGGTGCTGGAACACAACCTGAATTGCATAATTCACCTAGTATGCGTCCACTGTCTAATCCCAATCTACCATTTCCAACAAACATTGGGGGTGGTAGTACAATTGGATCCACATTACCATTAGAATCTTCAGGAATTTCTTCTCCATGTGTCAATGTGAGTGCTCCTTCCGGTGCTGTGCCCGGCGAAACTGTCAAAAGGAAGAGAGGGAGGCCTAGAAAATATGGCCCTGATGGAACCGTGTCATTGGCATTGACTCCGACGCCGGCTAGCCATCCCGGAGCCTTGACACAAGGCCAGAAACGCGGTAGAGGTCGCCCGCCGGGGTCTGGGAAGAAGCAGCAATTGGCTTCTCTTGGTCAATTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATATCATCACCATTGCAATTGGAGAAGACATTGCAACGAAACTCGTGGCATTTTCTCAACAGGGGCCTAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTTTCTACTGTGACACTTCGTCAGCCTTCAACCTCAGGTGGCACTGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCTGGCTCTTACTTGGTTGCTGATAGTGGTGGTCCCCGTGGTCGAACGGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGCCGTGTCATTGGTGGAGGAGTTGGTGGAGTGCTGATTGCAGCCAGTCCGGTTCAGGTGATAGTTGGGAGCTTTATTTGGGGTGGATCAAAGACAAAGATCAAGAAAAAAGAAAGTTCTGAAGCTGCAGAAGTTGCTATAGAGACGGATCATCAGGTGGTTCATAATCCAGTTGCAGTGAATAGCATTTCACCAAATCAGAATCTTACCCCAACCTCTTCTTTAAGTCCTTGGCCTGCATCGCGTCCATTGGACATGCGCAATTCCCATATTGATATTGATTTAATGCGTGGGTGA 1023 0.479 MDRGDQMALSGSASYYMQRGIPGAGTQPELHNSPSMRPLSNPNLPFPTNIGGGSTIGSTLPLESSGISSPCVNVSAPSGAVPGETVKRKRGRPRKYGPDGTVSLALTPTPASHPGALTQGQKRGRGRPPGSGKKQQLASLGQLMSGSAGMGFTPHIITIAIGEDIATKLVAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVADSGGPRGRTGGLSVSLASPDGRVIGGGVGGVLIAASPVQVIVGSFIWGGSKTKIKKKESSEAAEVAIETDHQVVHNPVAVNSISPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1345 340 CDD DUF296 153 267 IPR005175 -
Apr10g1345 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Apr10g1345 340 Gene3D - 154 297 - -
Apr10g1345 340 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Apr10g1345 340 MobiDBLite consensus disorder prediction 304 321 - -
Apr10g1345 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 270 - -
Apr10g1345 340 MobiDBLite consensus disorder prediction 304 323 - -
Apr10g1345 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 316 - -
Apr10g1345 340 MobiDBLite consensus disorder prediction 1 46 - -
Apr10g1345 340 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Apr10g1345 340 PRINTS AT-hook-like domain signature 120 131 IPR017956 GO:0003677
Apr10g1345 340 PRINTS AT-hook-like domain signature 223 233 IPR017956 GO:0003677
Apr10g1345 340 MobiDBLite consensus disorder prediction 28 46 - -
Apr10g1345 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 316 IPR039605 GO:0003680
Apr10g1345 340 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Apr10g1345 340 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Apr10g1345 340 MobiDBLite consensus disorder prediction 76 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1345 Apr-Chr10 25770326 25777808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1345 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 52.500 5.56e-90 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1345 - - gmx:100799791 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1345 10 25770326 25777808 Apr10g1345 10 25770326 25777808 ECH
Apr4g2223 4 31232358 31238751 Apr10g1345 10 25770326 25777808 PCT