Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1326 ATGGCTGTGGTGAGTCCTATGCCAGCAACTCTACAACGGGTCAGTTCTGTGAACTCGTTTCGTGATAAGGTTCATGGAATCACGAGTAGTAGGAGAGAAATTGTAAAAGAGCCAAGTCCTAGTCCAAGTATGGTTAATGATACACTCTATGTTGCTGTGGCAAAGGATGTGAAAGAAAGCAAATTAAATATGATATGGGCTATACAGAACTCTGGAGGAAGAAGAATTTGCATCCTTCATGTTCACACGCCCGCACCTCTGATACGAACCTCGATCGGTGCTGAATTTCCACCAAGTGCACTGAATGAGCAGGAAGTTCAAGCATACAGGGCAAATGAAAGGCAGGAAATGCATAAGGCTCTGGATGCCTATCTTGTTATTTGCCAAAAGATGGGGGTGTGGGCAGAAAAACTACACATTGAAACTGATTGCATTGAAAAAGGAATTGTAGAACTCATTTCCCAGTTTAGCATACAGAAGCTTGTAATGGGAGCAGCATCTGATAAGTACCATTCTAGAATGACAGCACTCCGATCTAAGAAAGCTATATATGTGAGTGAACAAGCTCCAACTTCTTGCCACATACAGTTTATCTGCAAGGGGTACCTCATACACACAAGGAACTGCAATTTGGACACAAGTAATGTAGGGGTCATATCTCCTTTGACACGACAAATGCCAAACTCTGAAGTTGGACATCTGACTCCGCAGAGATCTGAATCCGTTGCTCTTAGACAAAATAATTTGGCAAAACTAACTAATCAATTTCAAGGGTTATTTCGTAGAGGAAGATCTATCGATGACGGAGTAAGAAGGAGCATTTCATCTGCTTCTTCTTCAGAAAGGCTATTAACTCCACAGAGCAAGTTGGGTAGAGAAGTAGGTTTTGATGAGTCAGATGAGCAGTCAAGATGGAGTCCTTTAGTTCCGTCATTGGGTTCTGATAATGGTTCAGTTGAACCATTATTGACCCCTAATTTGATTAGTGATGGCAGTGAGAATGCATTAGACTTGAATTTGAGTAGCCGTTCTCTGATTGAAGAGGATCTTCATCATTCTTCATCCCCTAGTGTACTGCAGGATGGAGGAATGGATGATACTTTCTATGCTCAACTTGAGCAGGCTATGGCTGAAAATGGTAGTCATGATGCATATGGAGAAATTTTTAAGCGTGGGAAAGCTGAAAAAGATGCCATTGATGCTATATGCAGGGCTAAAGCCACTGAAATATTGTATAAAGAAGAGCATAAACTAAGGAAAGAACTTGAGGAAACAGTAAAGAAAGCAAATGAAGAACTAGATAACATGAAGAGCCAGACAGACAAAATTAATGAGGAACTCCAACTTGCCCGAGATCAAAAGTCATCACTAGAGAATCAACTTGCATCAGCTGAACTTAAGATAAAGGAGTTGAACCAGAAGCTTTTATCTGCTGAGGATTTGTTAAAAAACAATAAGGATCAACTAGATGATCTGCAAATACAGCGCGATAATGCATTGGCAGAGTCTGCGTTAAGGAGAAAACAAGAAGAGGCTTCAAGCACACATGCACTTCAGTTTTTCTTAGAATTCTCTTCTGAAGATATTAAACAAGCAACAAGTAACTTCAATCCGTCCTGTAAGATTGGAGAAGGCGGATATGGAAGTATTTTTAAAGGTATTTTGCGACACACTGAGGTGGCTATAAAAGTGCTGAATCCCAATAGCATGCAAGGAACATCAGAGTTTCAACAGGAGGTTGAGATATTGAGCAAGTTAAGGCATCCGAATCTTATCACACTTATAGGAGCCTGCCCAGAATCATCGACTCTTGTCTATGAGTATTTGCCCAACGGAAGCCTCGAAGATCGTCTATGTTGCAAGGATAACACCCAACCACTATCATGGCAAACTCGGATTCGCATTGCTGCAGAACTTTGTTCTGCTCTCATTTTTCTTCATTCCAGTAAACCTCATAGCATAGCACATTGTGACTTAAAACCCTCCAATATTCTCCTTGATGCAAACCTTGTTTGCAAGCTTAGTGACTTTGGAATATGTCGAATATTGTCTTGTCAAGAAAGTTCTAGTGACAACACTGCACAGTATTGGAGAACTGTTCCAAAGGGAACTTTTTTCTACATGGATCCTGAATTCCTTTCTTCTGGTGAACTTACACCAAAGTCAGATGTTTATTCATTTGGAATCATTCTATTAATATTGATTACTGGTAGACCAGCCTTGGGAATAATAAAGAAAGTGAAATACGCATTAGATGCTGGAAAGTTACAGTCCCTCTTGGATCCTTTGGCTGGAGACTGGCCATTTATGACGATCGAACAGTTGGCTCGCTTGGCTTTAAGGTGTTGTGAGAAGAATTATATGAGCCGGCCAAACCTGTATCCAGATGTTTGGACCATATTGGAACCAATGAGAGCTTCTTGTGGAGGAACAACACCTTTCAACTAG 2448 0.4077 MAVVSPMPATLQRVSSVNSFRDKVHGITSSRREIVKEPSPSPSMVNDTLYVAVAKDVKESKLNMIWAIQNSGGRRICILHVHTPAPLIRTSIGAEFPPSALNEQEVQAYRANERQEMHKALDAYLVICQKMGVWAEKLHIETDCIEKGIVELISQFSIQKLVMGAASDKYHSRMTALRSKKAIYVSEQAPTSCHIQFICKGYLIHTRNCNLDTSNVGVISPLTRQMPNSEVGHLTPQRSESVALRQNNLAKLTNQFQGLFRRGRSIDDGVRRSISSASSSERLLTPQSKLGREVGFDESDEQSRWSPLVPSLGSDNGSVEPLLTPNLISDGSENALDLNLSSRSLIEEDLHHSSSPSVLQDGGMDDTFYAQLEQAMAENGSHDAYGEIFKRGKAEKDAIDAICRAKATEILYKEEHKLRKELEETVKKANEELDNMKSQTDKINEELQLARDQKSSLENQLASAELKIKELNQKLLSAEDLLKNNKDQLDDLQIQRDNALAESALRRKQEEASSTHALQFFLEFSSEDIKQATSNFNPSCKIGEGGYGSIFKGILRHTEVAIKVLNPNSMQGTSEFQQEVEILSKLRHPNLITLIGACPESSTLVYEYLPNGSLEDRLCCKDNTQPLSWQTRIRIAAELCSALIFLHSSKPHSIAHCDLKPSNILLDANLVCKLSDFGICRILSCQESSSDNTAQYWRTVPKGTFFYMDPEFLSSGELTPKSDVYSFGIILLILITGRPALGIIKKVKYALDAGKLQSLLDPLAGDWPFMTIEQLARLALRCCEKNYMSRPNLYPDVWTILEPMRASCGGTTPFN* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1326 815 MobiDBLite consensus disorder prediction 271 286 - -
Apr10g1326 815 Coils Coil 412 502 - -
Apr10g1326 815 ProSitePatterns Protein kinases ATP-binding region signature. 542 563 IPR017441 GO:0005524
Apr10g1326 815 Gene3D Transferase(Phosphotransferase) domain 1 609 808 - -
Apr10g1326 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Apr10g1326 815 CDD STK_N 48 201 - -
Apr10g1326 815 MobiDBLite consensus disorder prediction 271 317 - -
Apr10g1326 815 Pfam Protein kinase domain 540 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1326 815 SMART serkin_6 536 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1326 815 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 66 173 - -
Apr10g1326 815 PANTHER OS02G0152300 PROTEIN 28 811 - -
Apr10g1326 815 SUPERFAMILY Protein kinase-like (PK-like) 513 793 IPR011009 -
Apr10g1326 815 PANTHER U-BOX KINASE FAMILY PROTEIN 28 811 - -
Apr10g1326 815 Gene3D Phosphorylase Kinase; domain 1 513 608 - -
Apr10g1326 815 ProSiteProfiles Protein kinase domain profile. 536 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1326 Apr-Chr10 25598306 25604381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1326 1 815 U-box Gene Family AT2G45910 47.694 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Apr10g1326 Pkinase 9.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1326 - - gmx:100781596 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1326 10 25598306 25604381 Apr10g1326 10 25598306 25604381 ECH
Apr10g1326 10 25598306 25604381 Apr4g2238 4 31392845 31399321 ECH
Apr4g2238 4 31392845 31399321 Apr10g1326 10 25598306 25604381 PCT