Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1318 ATGGCAGGGTGGTCGGCGCACGACGGCGCGGTTCCCCTAGAAGACAGTGGTGACGTTTTTGGAGTGTCGAACGACGAGACTCGGAATCGTTTCGAGAGGTTCCTTCTTCTGTTCTTGAGGGAGATCTGTGGCTTTGATTACTTTTGGGCTTTTCCTCCAATGCTGGGTGATGAGCAACGCGTGGATTTGTACAAGCTGTTTTTGGTTGTAAAGGGGAAAGGCGGGTACGACGCCGTTTGCAATGGAAAGTTGTGGGATTTGGTTGGGGAGGAATCTGGGTTGGGTCTGAGTGTTGGTTCATCTGTTAAACTGGTTTATGGTAAGTATTTGAGTGCTTTGGATGTATGGTTGAAGAAAGTTACTGACAGTAAGGTACCTCCTGAATGTGGTTTGGTGTATGATAGGGATAAGTTTGGAAGGCAGTTGATGGAGTTGCAGACTGAGGTGAAAGGGTTGTCCGGTTGTGCCAAGGATGAGGTGGTTGGGGAGGAGCTCAAGGGTGGATTTGATGATGATTTCATGGATGGGAGGAAGTTTTGTAGTGTTAATGAGGTGAAGGGTTTTGATTTAGAGTCTGATGGAGATGAAGAAATTCGAAATGGAGGATGTCCTGATTTGGATATGCCGGATTGTGGGATGGATGAGTCGGTTCTTGGAAATTCTGGTGATGGAAATGATGCGGTGGAAGTACAGGGAGGGATTGATGGAGGGAAAATGAATGCAGATGCAGAGCAGGTGGGGAATGTGTCTGATGCGGCAAACAATGGTTTGCTGAGATTGTTGAGTGGGAGTGAGAAGTGTGATGATGATGGTGATGGTTGCTTGGTATTGGATACATCTGGTGGTGATAGAGAGGGTTCTGTCGGTAAGAGGAAGAGAGAGTCTATATTGGATATGTTGAGCTGGGTTACTGGTGTTGCAATGAATCCTTGTGATCCTGAAGTTGGTTCAATACCTGAAAAGTCAAAGTGGAAGTCTTACAGTAATAAGGAGGTGTGGAAGCAGGCTTTATTGTATCGAGAGGCAGTGTTTCTCAAAAAAGGATTTGAGTCGAGCAGTGAACAGCAAAATTGGCAGAGTCAGAAGATGCATCCTTGCATGTATGATGATCATCTTGGGGCAACCTATAATCTTAGAGAGCGGCTGAAAAGTGACAGAGGAGTTATAGTTAGAAAACATACATCTGTACGAAGCTCTTCAGATTCGTCTGAAGGAATTTTAGACAGAACACCAAGTCCTCATACGGAAGATCGGGCTGAAAAACGGTTGCTTGATTTCTCAGATGGACATTCAGGTCTTGATAGATGTGCCACAGTACGCATCCCCGTGGGGTCAAATCATCAAGCTGAAATACCAGAATGGACCGGCATGACTTCTGAAGGAGATTCTAAGTGGTTAGGGACCCGAGTATGGCCATCAAAAACAGTAAATTCCAGACTTCTCATTGAAAGGGATCCCATAGGAAAAGGAAGACAGGATTCATGTGGCTGCTCGGTACCTGGTTCTGTTGAATGTGTAAGATTCCACATTGGTGAGAAAAGGGCTAAAGTTAAGCTTGAATTGGGTGAGGCTTTTCATGAATGGAATTTTGATAAGGTGGGTGAAGATGTTAAGAAATTGTGGACAGAAGAAGAAGAGAAAAAATTTGAGAATGTGGTACGATCAAACCGTGCATCGTCTGAGACATACTTTTGGGACCATATTTTTAGGACATTTCCTGAGAAGAGCAGGGCAGATTTAGTTAGCTACTACTTCAATGTCTTTCTTTTGCAGCGCAGAGGACACCAAAATAGGCATACTCCTGCTAACATTGACAGTGATGATGATGAATCTGAATTTGGACCACTTAGGAATGTTTTTGGGCATCAGACCCAAAATTCACGTGGTTCCATCATGTTAACCCCCAAAAAGCCACAGACAAAGGGAGGATAG 1932 0.4462 MAGWSAHDGAVPLEDSGDVFGVSNDETRNRFERFLLLFLREICGFDYFWAFPPMLGDEQRVDLYKLFLVVKGKGGYDAVCNGKLWDLVGEESGLGLSVGSSVKLVYGKYLSALDVWLKKVTDSKVPPECGLVYDRDKFGRQLMELQTEVKGLSGCAKDEVVGEELKGGFDDDFMDGRKFCSVNEVKGFDLESDGDEEIRNGGCPDLDMPDCGMDESVLGNSGDGNDAVEVQGGIDGGKMNADAEQVGNVSDAANNGLLRLLSGSEKCDDDGDGCLVLDTSGGDREGSVGKRKRESILDMLSWVTGVAMNPCDPEVGSIPEKSKWKSYSNKEVWKQALLYREAVFLKKGFESSSEQQNWQSQKMHPCMYDDHLGATYNLRERLKSDRGVIVRKHTSVRSSSDSSEGILDRTPSPHTEDRAEKRLLDFSDGHSGLDRCATVRIPVGSNHQAEIPEWTGMTSEGDSKWLGTRVWPSKTVNSRLLIERDPIGKGRQDSCGCSVPGSVECVRFHIGEKRAKVKLELGEAFHEWNFDKVGEDVKKLWTEEEEKKFENVVRSNRASSETYFWDHIFRTFPEKSRADLVSYYFNVFLLQRRGHQNRHTPANIDSDDDESEFGPLRNVFGHQTQNSRGSIMLTPKKPQTKGG* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1318 643 MobiDBLite consensus disorder prediction 598 643 - -
Apr10g1318 643 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 51 641 - -
Apr10g1318 643 MobiDBLite consensus disorder prediction 389 419 - -
Apr10g1318 643 MobiDBLite consensus disorder prediction 618 643 - -
Apr10g1318 643 Gene3D - 17 126 IPR036431 GO:0003677
Apr10g1318 643 MobiDBLite consensus disorder prediction 393 409 - -
Apr10g1318 643 MobiDBLite consensus disorder prediction 598 615 - -
Apr10g1318 643 SUPERFAMILY ARID-like 28 123 IPR036431 GO:0003677
Apr10g1318 643 Pfam Myb-like DNA-binding domain 539 587 IPR001005 -
Apr10g1318 643 Pfam ARID/BRIGHT DNA binding domain 52 112 IPR001606 GO:0003677
Apr10g1318 643 ProSiteProfiles ELM2 domain profile. 439 555 IPR000949 -
Apr10g1318 643 SMART bright_3 25 119 IPR001606 GO:0003677
Apr10g1318 643 SMART ELM2_2 441 492 IPR000949 -
Apr10g1318 643 SMART ARID_2 25 114 - -
Apr10g1318 643 ProSiteProfiles ARID domain profile. 25 118 IPR001606 GO:0003677
Apr10g1318 643 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 51 641 - -
Apr10g1318 643 CDD SANT 541 588 IPR001005 -
Apr10g1318 643 CDD ARID 27 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1318 Apr-Chr10 25500373 25504862 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Apr10g1318 ARID 2.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1318 - - gmx:100779445 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2252 4 31543567 31549082 Apr10g1318 10 25500373 25504862 PCT