Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1317 ATGTCCCTTCTTCTCTTTCTTCTACCATTCATTCAAATTCTAACTTTTCATGCTTCTCCCATTTCCTCCTCCGACATTATCATCGTACAAGGAAACACGACACTGAGGAGCCAAAACCAAACCTTCGAACTGGGCTTCTTCAACTTCACCACAGTCTCACCCAACTTCTACCTCGCGATCCGTTACACATCACTACCAGCCCCAAACATCATTTGGGTCGCTAACCGCCATCAACCAACTCCAACCCTCGACGGTTCGGTTCTTCGGTTGACCCCAACCGGTCAATTACTGCTCACTCACTCTAACTCCACCGTCTGGGAAGCCAACCACACCCATGCCGTTCAATTCAACCTTCTAGAAACTGGTAACTTAGTTCTCCTATCCTCTGACGGCGTCGTTTTATGGCAGAGCTTCGATTACCCCACCGACACTTGGCTTCCCGGCATGAACCTGACCCGGTTCCGATCCCTTCTTTCATGGCGCACCGAAACGGACCCGTTTCCTGGGTTTTATTCTCTGCGGCTGAGACCACCGGATTACGGTGAGTTCGACCTCGTCTTCAACGGCACCGTTTCGTACTGGTCCACCGGGAATTGGACCAATGGGTCGTTCCTCAATGTTCCGGAGATGACTATTCCTTACCTTTACCGGTTCGATTTCGAGGACCCGTTTTCGCCGACGGCGTCTTTTGGGTTCTCCGAGAGGGCCTCGGAGAACGGAATCCGGCCGCCGACAATGTTCCGCGTGGAACCGTTCGGGCAGGTTCGGCAGTACACGTGGTCGAAGCAGGCGGGTTCGTGGAACATGTTTTGGTCGAAGCCTGAGAGTGTGTGTCAGGTTCGGGGGTTGTGCGGTGGGTTCGGTGTGTGCAGTGGGGAAATGTCGAGGGTTTGTGAATGTGTGAGTGGGTTTGAGCCTGTGGATGGTGTTGGGTGGGGTTCCGGTGACCACTCTCGGGGTTGTCGCCGTGTGGTGGACACGTGTGATGAGAGTGATGGTTTTGAGGATCTGGGTGTGGTCACGTTTGGTTATGGTAATGTGAGTATGTTTAGGGCTAAATCTAGAAGCTTATGTGAGCGTGAGTGTTTGAGTTCTTGTGGTTGTGTTGGTTTGGCTTTTGATGGAGGGAGTGGTGTGTGTAAGAATTTTTATGGGGTTCCAAGAGGTGGATCTGTGAAGAGGGGTTTTAGTCGTAAGGTTTTGAGTGCAGCTGTTATTGGTTCGGTTGCGGTTTTGGGTGTGGTGGTGGTGACATTGTTGGTGGTGGTGAAGAAGAGGAGGAAGAAGGGTTTGGAGGAAGATGGGTTTGTGCCTGTGTTGAATTTGCAGGTGTTTTCTTATAAGGAGCTTCAGTTGGCGACCCGTGGGTTTTCGGAGAAGGTTGGGCATGGTGGGTTTGGGACTGTGTTTCAAGGGGAGTTGAGTGATTCTACACTTGTGGCTGTAAAGAGGTTGGAGAGGCCTGGGGGTGGAGAGAAAGAGTTTAGGGCCGAGGTGTCTACAATTGGGAACATTCAACATGTTAATCTTGTGAGGCTCAGAGGGTTTTGCTCTGAGAATTCTCATAGGCTTTTGGTTTATGAGTATATGCAGAATGGTGCCCTCAGCACTTATTTGCGCAAAGAGGGGCCAAGTTTGAGCTGGGATGTTAGGTTTCGGGTGGCCATTGGAACTGCTAAAGGTATAGCGTATTTACATGAGGAATGTAGGTGTTGCATCATACACTGTGATATCAAGCCTGAAAACATCCTTTTGGATGGTGACTTCACTGCAAAAGTTTCTGATTTTGGGTTGGCGAAGCTCATTGGTAGGGACTTCAGTAGGGTGTTGGCAACCATGAGGGGTACGTGGGGATATGTTGCCCCAGAGTGGATTTCTGGTGTGGCGATTACCACCAAAGCTGATGTTTACAGCTATGGAATGACATTGCTGGAACTGATTGGTGGTCGCCGGAATGTGGAGGCGCCACCTTCTGCTGGGGCTAGGGAGAGTGGTTGCGAGACGGGAGAGAAGTGGTTCTTTCCTCCATGGGCGGCACAGCAGATAATTGAGGGTAATGTGACTAATGTGATTGATAAGAGGCTTGGAAATGTATATAACATTGAGGAGGCTAGGAGGGTTGCTTTGGTGGCAGTTTGGTGCATTCAAGATGATGAGGCAATGAGACCTACCATGGGTATGGTGGTGAAAATGTTAGAGGGGTTGGTGGAGGTGAATGTTCCTCCACCGCCGAAGTTGCTACAGGCGTTAGTTACTGGGGATTCCTTTCACGGGGTCAAGGCTGATTCCGGCACCGGGGTGTCCACTGGTGGCAGCTTATCTGATGGCAATTTGGAAGTGTCAACTGCTGATTCTGAATCATATATAGGGAATGTTTTGTCCCCAATGGATGTTAATGTTAGTGTTCGATGA 2412 0.5017 MSLLLFLLPFIQILTFHASPISSSDIIIVQGNTTLRSQNQTFELGFFNFTTVSPNFYLAIRYTSLPAPNIIWVANRHQPTPTLDGSVLRLTPTGQLLLTHSNSTVWEANHTHAVQFNLLETGNLVLLSSDGVVLWQSFDYPTDTWLPGMNLTRFRSLLSWRTETDPFPGFYSLRLRPPDYGEFDLVFNGTVSYWSTGNWTNGSFLNVPEMTIPYLYRFDFEDPFSPTASFGFSERASENGIRPPTMFRVEPFGQVRQYTWSKQAGSWNMFWSKPESVCQVRGLCGGFGVCSGEMSRVCECVSGFEPVDGVGWGSGDHSRGCRRVVDTCDESDGFEDLGVVTFGYGNVSMFRAKSRSLCERECLSSCGCVGLAFDGGSGVCKNFYGVPRGGSVKRGFSRKVLSAAVIGSVAVLGVVVVTLLVVVKKRRKKGLEEDGFVPVLNLQVFSYKELQLATRGFSEKVGHGGFGTVFQGELSDSTLVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEYMQNGALSTYLRKEGPSLSWDVRFRVAIGTAKGIAYLHEECRCCIIHCDIKPENILLDGDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTLLELIGGRRNVEAPPSAGARESGCETGEKWFFPPWAAQQIIEGNVTNVIDKRLGNVYNIEEARRVALVAVWCIQDDEAMRPTMGMVVKMLEGLVEVNVPPPPKLLQALVTGDSFHGVKADSGTGVSTGGSLSDGNLEVSTADSESYIGNVLSPMDVNVSVR* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1317 803 CDD STKc_IRAK 461 735 - -
Apr10g1317 803 ProSitePatterns Protein kinases ATP-binding region signature. 461 483 IPR017441 GO:0005524
Apr10g1317 803 Pfam S-locus glycoprotein domain 194 306 IPR000858 GO:0048544
Apr10g1317 803 Gene3D - 26 138 IPR036426 -
Apr10g1317 803 SMART blect_4 28 141 IPR001480 -
Apr10g1317 803 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-2 4 791 - -
Apr10g1317 803 Gene3D Transferase(Phosphotransferase) domain 1 530 740 - -
Apr10g1317 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 199 IPR036426 -
Apr10g1317 803 SUPERFAMILY Protein kinase-like (PK-like) 438 733 IPR011009 -
Apr10g1317 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 573 585 IPR008271 GO:0004672|GO:0006468
Apr10g1317 803 CDD B_lectin 31 141 IPR001480 -
Apr10g1317 803 Pfam Protein kinase domain 458 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1317 803 Gene3D Phosphorylase Kinase; domain 1 428 529 - -
Apr10g1317 803 ProSiteProfiles Bulb-type lectin domain profile. 25 139 IPR001480 -
Apr10g1317 803 ProSiteProfiles Protein kinase domain profile. 455 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1317 803 SMART serkin_6 455 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1317 803 PIRSF SRK 1 786 IPR024171 GO:0004674
Apr10g1317 803 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 4 791 - -
Apr10g1317 803 Pfam D-mannose binding lectin 70 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1317 Apr-Chr10 25492659 25495427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1317 445 742 Receptor kinase-like Gene Family AT5G20050 46.945 1.38e-82 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Apr10g1317 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1317 - - lja:Lj0g3v0252549.1 1248.03