Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1316 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCGCACCTGCATGGAACACCAGTATATTACTATTGCCCAACAACTTTAGAAGAGCGTGAATCTTTAACATCTAATGATGGTACAGCTGTTTCACTCACTGCTGGATTGCTGGTGGGCTTGAACCTGGAAACGTCCACGCCTGATACATACCAGCCCCCTCCTGCACCTCTACCTTATGATGTGGTCCTGGGAGGTCCAGCATCAACAGATTCTGAGTCAGGCAGAGAAACTCTTAGTGGAAGTAGTTTTGAAACATTAATTACATGTGAGGATCTCGAAGAATCTGACTGTAAAGCTCAAGCTAATTCTGCACCTTTTTCTCCAAGGAAGGCAGAACTGCCAAAATCAAATGAATCACATGCATTAGTGACAGAAGAAGAGGACGTCTGTCCAATTTGTCTTGAAGAGTATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCATCTGTCATGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGGTATTTGACCAGACACTTAACTAG 576 0.434 MGGCCCSARKPHLHGTPVYYYCPTTLEERESLTSNDGTAVSLTAGLLVGLNLETSTPDTYQPPPAPLPYDVVLGGPASTDSESGRETLSGSSFETLITCEDLEESDCKAQANSAPFSPRKAELPKSNESHALVTEEEDVCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMVFDQTLN* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1316 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 191 - -
Apr10g1316 191 SMART ring_2 140 180 IPR001841 -
Apr10g1316 191 Pfam Ring finger domain 139 180 IPR001841 -
Apr10g1316 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 187 IPR013083 -
Apr10g1316 191 MobiDBLite consensus disorder prediction 110 130 - -
Apr10g1316 191 SUPERFAMILY RING/U-box 132 187 - -
Apr10g1316 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Apr10g1316 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1316 Apr-Chr10 25484361 25488347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1316 1 191 C3H Transcription Factor Family AT4G00335 62.304 4.23e-82 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1316 - - gmx:100792561 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2254 4 31572587 31576222 Apr10g1316 10 25484361 25488347 PCT