LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g1314	ATGTCATCTCCGTATTCTCACCGCCGGCGATCCAGCTCCGATTACCGGAGCACTCCGGGACGCGTTCCTCACTCCCCCTTATACCCCTCTTCCGAACTCAGCACCTCCACCACATCCTCTGGCCGCCAGAACCCCCTCGCCGGCGCCGCCAGGTCCTTCGCCGGAATGTTTTCCGCTTGCTTCACGCCGCCGGAGTCCAATAGCTCCAAGAGTCTTGAGGATTCCGTGGAATTCAAGTCTTCATCTAGGGCTGGTAGTCAAAGAGGGCGTGGCTCAAATCTAGGTATCGGCATCAGTTCACAGAACTCAATCCGGGGGAAGGAACCTGGCATTGTGAAATTCACCATGGAGGAAATTTTACAAGTCACAAGAAACTTCTCCCCTTCTTTCAAGATTGGTCAAGGTGGCTTTGGGGCAGTTTACAAGGCCAAACTCCTAGATGGATCTGTTGTTGCAGTAAAACGTGCCAAGAAGATTGTGTATGAGAAACATTTGGGGGTAGAGTTCCAGAGCGAGATCCAAACACTATCACGGGTGGAACATTTGAACTTGGTCAAATTCTATGGATACTTGGAGCAAGGGGATGAAAGGATTATTATTGTGGAGTATGTTCCAAATGGAACCCTTAGAGAACATTTAGATTGCATTCATGGAAACATTCTGCACCTCGCTGCTCGTCTAGACATCGCAATTGATGTGTCTCATGCTATCACTTATCTTCATATGTATATAGATCATCCTATCATTCATAGGGACATAAAATCTTCCAACATTCTCCTCACGGAAAACTTGCGAGCTAAGGTAGCAGACTTTGGTTTTGCTAGACAAGCAGCTGATAGTGATTCTGGCATGACTCATATTTCTACCCAAGTTAAAGGAACAGCTGGATACTTGGACCCTGAATACCTGAAAACTTATCAACTAACTGAGAAGAGTGATGTGTATTCATTTGGAGTTTTGCTTGTTGAACTTGTCACAGGAAGACGCCCCATTGAACCAAAATTTGAACTCAGGGAGAGAATAACGGCAAAATGGGCCATGAAGAAGTTTATTGAGGGAGGTGCTATATCAGTGTTGGACCCAAGACTGGATCATAGTGATGCAAATAATTTAGCACTAGAAAAGGTACTTGAATTAGCATTACAATGTTTGGCTCCTCGTAGACAAAGTAGGCCAAATATGAAGAGATGTGCTGAGATCCTTTGGGCCATCCGCAAGGACTACAGAGAGCTATCAGCTTCAAATTTTCGCTCATATTCCACTTCTTCCCAAAGGAGTTCCTCATTGAAAGAATGA	1296	0.4545	MSSPYSHRRRSSSDYRSTPGRVPHSPLYPSSELSTSTTSSGRQNPLAGAARSFAGMFSACFTPPESNSSKSLEDSVEFKSSSRAGSQRGRGSNLGIGISSQNSIRGKEPGIVKFTMEEILQVTRNFSPSFKIGQGGFGAVYKAKLLDGSVVAVKRAKKIVYEKHLGVEFQSEIQTLSRVEHLNLVKFYGYLEQGDERIIIVEYVPNGTLREHLDCIHGNILHLAARLDIAIDVSHAITYLHMYIDHPIIHRDIKSSNILLTENLRAKVADFGFARQAADSDSGMTHISTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELRERITAKWAMKKFIEGGAISVLDPRLDHSDANNLALEKVLELALQCLAPRRQSRPNMKRCAEILWAIRKDYRELSASNFRSYSTSSQRSSSLKE*	432

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Apr10g1314	431	ProSiteProfiles	Protein kinase domain profile.	126	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Apr10g1314	431	SMART	serkin_6	126	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Apr10g1314	431	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	248	260	IPR008271	GO:0004672\|GO:0006468
Apr10g1314	431	Gene3D	Phosphorylase Kinase; domain 1	95	203	-	-
Apr10g1314	431	MobiDBLite	consensus disorder prediction	28	46	-	-
Apr10g1314	431	PANTHER	RECEPTOR-LIKE PROTEIN 55	6	420	-	-
Apr10g1314	431	MobiDBLite	consensus disorder prediction	1	46	-	-
Apr10g1314	431	ProSitePatterns	Protein kinases ATP-binding region signature.	132	158	IPR017441	GO:0005524
Apr10g1314	431	Gene3D	Transferase(Phosphotransferase) domain 1	204	426	-	-
Apr10g1314	431	MobiDBLite	consensus disorder prediction	66	100	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g1314	Apr-Chr10	25473560	25477150	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g1314	85	415	Trihelix Transcription Factor Family	AT1G70460	41.543	7.04e-69	229

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IV	Apr10g1314		Pkinase	3.9e-49	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g1314	-		-	gmx:100792034	663.685

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