Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1314 ATGTCATCTCCGTATTCTCACCGCCGGCGATCCAGCTCCGATTACCGGAGCACTCCGGGACGCGTTCCTCACTCCCCCTTATACCCCTCTTCCGAACTCAGCACCTCCACCACATCCTCTGGCCGCCAGAACCCCCTCGCCGGCGCCGCCAGGTCCTTCGCCGGAATGTTTTCCGCTTGCTTCACGCCGCCGGAGTCCAATAGCTCCAAGAGTCTTGAGGATTCCGTGGAATTCAAGTCTTCATCTAGGGCTGGTAGTCAAAGAGGGCGTGGCTCAAATCTAGGTATCGGCATCAGTTCACAGAACTCAATCCGGGGGAAGGAACCTGGCATTGTGAAATTCACCATGGAGGAAATTTTACAAGTCACAAGAAACTTCTCCCCTTCTTTCAAGATTGGTCAAGGTGGCTTTGGGGCAGTTTACAAGGCCAAACTCCTAGATGGATCTGTTGTTGCAGTAAAACGTGCCAAGAAGATTGTGTATGAGAAACATTTGGGGGTAGAGTTCCAGAGCGAGATCCAAACACTATCACGGGTGGAACATTTGAACTTGGTCAAATTCTATGGATACTTGGAGCAAGGGGATGAAAGGATTATTATTGTGGAGTATGTTCCAAATGGAACCCTTAGAGAACATTTAGATTGCATTCATGGAAACATTCTGCACCTCGCTGCTCGTCTAGACATCGCAATTGATGTGTCTCATGCTATCACTTATCTTCATATGTATATAGATCATCCTATCATTCATAGGGACATAAAATCTTCCAACATTCTCCTCACGGAAAACTTGCGAGCTAAGGTAGCAGACTTTGGTTTTGCTAGACAAGCAGCTGATAGTGATTCTGGCATGACTCATATTTCTACCCAAGTTAAAGGAACAGCTGGATACTTGGACCCTGAATACCTGAAAACTTATCAACTAACTGAGAAGAGTGATGTGTATTCATTTGGAGTTTTGCTTGTTGAACTTGTCACAGGAAGACGCCCCATTGAACCAAAATTTGAACTCAGGGAGAGAATAACGGCAAAATGGGCCATGAAGAAGTTTATTGAGGGAGGTGCTATATCAGTGTTGGACCCAAGACTGGATCATAGTGATGCAAATAATTTAGCACTAGAAAAGGTACTTGAATTAGCATTACAATGTTTGGCTCCTCGTAGACAAAGTAGGCCAAATATGAAGAGATGTGCTGAGATCCTTTGGGCCATCCGCAAGGACTACAGAGAGCTATCAGCTTCAAATTTTCGCTCATATTCCACTTCTTCCCAAAGGAGTTCCTCATTGAAAGAATGA 1296 0.4545 MSSPYSHRRRSSSDYRSTPGRVPHSPLYPSSELSTSTTSSGRQNPLAGAARSFAGMFSACFTPPESNSSKSLEDSVEFKSSSRAGSQRGRGSNLGIGISSQNSIRGKEPGIVKFTMEEILQVTRNFSPSFKIGQGGFGAVYKAKLLDGSVVAVKRAKKIVYEKHLGVEFQSEIQTLSRVEHLNLVKFYGYLEQGDERIIIVEYVPNGTLREHLDCIHGNILHLAARLDIAIDVSHAITYLHMYIDHPIIHRDIKSSNILLTENLRAKVADFGFARQAADSDSGMTHISTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELRERITAKWAMKKFIEGGAISVLDPRLDHSDANNLALEKVLELALQCLAPRRQSRPNMKRCAEILWAIRKDYRELSASNFRSYSTSSQRSSSLKE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1314 431 ProSiteProfiles Protein kinase domain profile. 126 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1314 431 SMART serkin_6 126 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1314 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Apr10g1314 431 Gene3D Phosphorylase Kinase; domain 1 95 203 - -
Apr10g1314 431 MobiDBLite consensus disorder prediction 28 46 - -
Apr10g1314 431 PANTHER RECEPTOR-LIKE PROTEIN 55 6 420 - -
Apr10g1314 431 MobiDBLite consensus disorder prediction 1 46 - -
Apr10g1314 431 ProSitePatterns Protein kinases ATP-binding region signature. 132 158 IPR017441 GO:0005524
Apr10g1314 431 Gene3D Transferase(Phosphotransferase) domain 1 204 426 - -
Apr10g1314 431 MobiDBLite consensus disorder prediction 66 100 - -
Apr10g1314 431 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 2 6 420 - -
Apr10g1314 431 SUPERFAMILY Protein kinase-like (PK-like) 107 404 IPR011009 -
Apr10g1314 431 Pfam Protein kinase domain 131 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1314 Apr-Chr10 25473560 25477150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1314 85 415 Trihelix Transcription Factor Family AT1G70460 41.543 7.04e-69 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Apr10g1314 Pkinase 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1314 - - gmx:100792034 663.685