Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1311 ATGGGTTTTCCGGTGGGTTACGCGGAAGTGTTCTTCCCGAACCCGTTCCTGCACACGCTGGCCCTCCTCGGACTTCTCCGAAACCTCGTCTTCTTCCTCTTCCACTTCCTCGGCCTCTCTGACTTCCTCGAATCCGAGGTGACGTGGCCGGATCCCGCCGCCGGCGCCCGCACCGCCGACATGGCGAGGACCCCCTCTCTGTCGGCGGTGCTGATCCGTGAACTGCTTCCGGTGGCAAAGTTCGGCGACCTCGAGGAAAACAAGGAAACGAGTTGCGCGGTGTGTCTGTTCGAGTTCTCCGCGGAGGAAGAGATTCGGTGTATGCGAAACTGCACGCACATTTTTCACCAGAGTTGCGTGGACCGTTGGATCGATCACGATCAGAAAACGTGTCCTCTTTGTAGAACTCCCTTTGTTCCCGATGATATGCTTGATGATTATAATCAACGCCTTTGGGCTGCTTCTGGTGTTACCGAGTTCTACGCCGATTACACTTCTTCCTTCTGA 507 0.5602 MGFPVGYAEVFFPNPFLHTLALLGLLRNLVFFLFHFLGLSDFLESEVTWPDPAAGARTADMARTPSLSAVLIRELLPVAKFGDLEENKETSCAVCLFEFSAEEEIRCMRNCTHIFHQSCVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGVTEFYADYTSSF* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1311 168 PANTHER BRH1 RING FINGER PROTEIN 1 164 - -
Apr10g1311 168 SMART ring_2 92 134 IPR001841 -
Apr10g1311 168 Pfam Ring finger domain 91 135 IPR001841 -
Apr10g1311 168 SUPERFAMILY RING/U-box 77 142 - -
Apr10g1311 168 ProSiteProfiles Zinc finger RING-type profile. 92 135 IPR001841 -
Apr10g1311 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 140 IPR013083 -
Apr10g1311 168 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1311 Apr-Chr10 25432996 25433662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1311 1 167 C3H Transcription Factor Family AT1G63840 45.349 8.23e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1311 K16281 - gmx:100500261 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2257 4 31601851 31602415 Apr10g1311 10 25432996 25433662 PCT