Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1310 ATGGCATCTACCACAGGAGGATCCTCTTCTTCCATCTTAAACTCAAGATGGATCAACCATGTTTTCTTGAGTTTTAGGGGTGATGACACACGCAAGGGTTTCACAGACCATCTTTTTGCTTCACTAGAAAGAAGGGGTATCAAAACATTCAAGGATGATCATGATCTTGAGAAGGGAGAAGTGATATCATTAGAGCTCATGAAAGCCATTGAAGAGTCCATGTTTGCACTCATTATTCTCTCACCAAACTATGCTTCCTCAACATGGTGTCTGGATGAGTTACAAAAGATTGTTGAATGCAAGGCTTCTAATGGTCAAGCCGTTTTTCCTATCTTCTATGGTGTAGACCCCTCTGATGTAAGGCATCAAAAAAGAAGCTTTGCCAAAGCTTTTAGAAAACATGAAGAGAAATTCAGAGAGGATAGAAAGAAGGTGCAAAGGTGGAGACATGCCTTAAGAGAAGTTGCAAGTTACTCTGGTTGGCACTCCAAGGATCTGCATGAGTCAGAATTGATTGAAACAATTGTTGGGCACATACAGAAAAGATTAATTCCTAGATTGGCATCTTGCATGGATAACCTTGTTGGGATTGATTCACGGATGCAGGAAGTTAATTCACTCATAGGCATACGGTTAAATGATGTTCGCTTCATAGGAATATGGGGCATGGGAGGCATAGGTAAGACAACTATTGCTAGATTAGTCTATGAAGCAATTAAAGAGGATTTCAAGGTTAGTTGCTTCCTAGAAAACATTAGAGAGGTGTCTAAGACAAATGGTTTAGTTCACATCCAAAAGGACCTTCTTTCTCATCTTAATATAAGAAACAACGATTTTTATAATTTTCATGATGGGAAAAAGATAATAGCAAACTCTTTAAGCAACAAAAAGATTCTTCTTGTTCTTGATGATGTGAGTGAATTAAGCCAACTGGAGAATTTAGCTGGAAAGCAAGAATGGTTTGGTCCAGGAAGTAGAGTAATCATCACAACAAGAGATAAGCACCTACTAGTGACCCATGGAGTGCATAAAACATGTAAGGCTAGAGGCTTATCCCAAAATGAAGCCCTTAAGCTTTTCTGTTTGAAAGCATTTAAACAAGATCAACCTAAAGAAGAGTATTTGAGTTTGTGCAAAGAAGTGGTTGAATATACAAAAGGCCTTCCATTGGCACTTGAGGTATTGGGTTCCTATCTTCATGGAAGAACCGTTGGAGTTTGGCATAGTGCTTTAGAACAAATAAGAAGTTTTCCACACTCCAAAATCCAAGATACACTGAAAATAAGTTATGACAGTTTACAACCTACGGAGAAAAATATGTTTCTAGATATTGCTTGTTTCTTCAAAGGGATGGACATAAATGAAGTAATAAATATATTAGAAAATTGTGGTGATCATCCCAAAATCGGAATTGACATTTTGATTGAAAGATCTTTGGTAACTCTAGATAGGATGAATGGCAAGTTATGGATGCATGATTTGCTACAAGAAATGGGCAAGAATATTGTATTTCAGGAATCTCCAAATGATCCTGGCAAACGTAGTAGGTTGTGGTCTCAGAAAGACGTTGATCATGTATTGACAAAAAATAAGGGAACTGATGAAATTCGAAGCATAGTTCTGAACTTAGTTCAACCATACGAAGCACGTTGGAGGGCTGAAGCCTTTTCCAAGATAAATGAGTTAAGGTTACTCAAGTTATGCGACATGCAACTTCCACTTGGCCTCAAATGCCTTCCTAGTGCATTGAAAGTTCTTCATTGGAGAGGATGTCCTTTGAAAACCCTGCCACTTGATAATCAATTAGATGAAGTTGTTGACCTCAAATTGCCTCATAGCAGAATAGAACAACTTTGGCATGGGACAAAGTTTATGGAAAAGCTGAAGTCCATTGATCTGAGTTTTTCCAAGAACCTAAAGCAGTCCCCGGATTGTGTTGGAGTTTCAAATCTTGAATCATTGGTTCTTGAAGGTTGCATAAGTTTAACTGAGGTTCATCAGTCCCTTGTACACCATAAGAAACTTGTTCTGATGAATTTAAAAGATTGCAGAATGCTCAAATCTCTTCCAAGAAAAATGGAGATGAGTTCCTTGAAAAATTTAAGTCTTTCTGGTTGCTCTGAATTTAAATATCTTCCAGAATTTGGGGCATGCATGGAACATTTGTCAATGCTTTCTTTAGAGGGAACTGCTATAACAAAACTACCCTCATCACTCGGATGTCTAGTTGGCCTTGCACTTTTGGATTTAAAGAATTGCAAGAACCTTGTTTGCCTTCCAGATACCATTCATAAATTAAAGTCCCTCATAGTGTTGAATGTTTCTGGTTGCTCAAAAATCCATAGCTTGCCAGAGAGTTTAAAGGAAATCAAGTGTTTGGAGGAACTTAACGCAAGTGAAACTGCTATTGAAGAGCTACCTTCATTTGTCTTTTCTCTTGAAAACCTCAAAGAAATCTCATTTGCTGGGTGCAAAGGGCCAGTATCTAAGTCAATGAACATGTTTTTTCACCCCTTTAAGTGGATGTTTGGGAATCAGCAAGCTCCAACTGGATTTAGATTGCCACCTTCTATATTGGGTCTACCCTCTTTGAGCTATATAAATTTAAGTTACTGTAATCTATCTGAAGAATCAATCCCAGATTATTTTTGTCACTTATCTTCATTATTGATGCTAGATCTCACTGGCAACAATTTTGTTAGTCTACCAAGTTGTATTTCCAAACTCTCAAAGCTTAAATATCTTAGGGTAAACTGGTGTAAAAAGCTTCAAAAGTTGCCAGAACTTCCATCAAGCATAAGAGAATTGGATGCAAGCAATTGTGCTTCACTGGAAACTTCCAAATTCAATCCATCCAATCCATGCAGTCTCTTTGCATCACCAACAACATGGTACATGCCAAGTGAACTAAAAAAGTTTTTAGAGGCAGCATGTCTCCCCAGAGCAAGATTTGACATGCTTATCACAGGGGGTGAAATTCCATCATGGTTTGTTCCTCAAAAATGTGTTTCCTTTGCAAAAGTATCAGTCCCTCATAATTGCCCTCTAACTGAATGGGTGGGATTTGCTCTGTGTTTCATGTTAGTAAGTTATGATGATCCACCTGGAGTGTGTCCTCATGAAGTTGATTGTTACTTGTTTGGACCTAATGGTAAGATGTTTATCACCTCCAGGGATTTACCTCCTATGGAGCCATATTACCCTCACCTTTATATTCTTTATTTGTCCATTGATAAATTTCGTGACAGAATTTATGGAGGTGGTGCCGGCAGTGAAATTGAATTTGTATTGAAAAGTTATTGCTGCTATTCATTGCAAATAGTGAGATGTGGATGCCGTTTGGTATGTAAGCAAGATGTTGAAGATATATACAGAAATAATTTCTTGTAG 3390 0.3785 MASTTGGSSSSILNSRWINHVFLSFRGDDTRKGFTDHLFASLERRGIKTFKDDHDLEKGEVISLELMKAIEESMFALIILSPNYASSTWCLDELQKIVECKASNGQAVFPIFYGVDPSDVRHQKRSFAKAFRKHEEKFREDRKKVQRWRHALREVASYSGWHSKDLHESELIETIVGHIQKRLIPRLASCMDNLVGIDSRMQEVNSLIGIRLNDVRFIGIWGMGGIGKTTIARLVYEAIKEDFKVSCFLENIREVSKTNGLVHIQKDLLSHLNIRNNDFYNFHDGKKIIANSLSNKKILLVLDDVSELSQLENLAGKQEWFGPGSRVIITTRDKHLLVTHGVHKTCKARGLSQNEALKLFCLKAFKQDQPKEEYLSLCKEVVEYTKGLPLALEVLGSYLHGRTVGVWHSALEQIRSFPHSKIQDTLKISYDSLQPTEKNMFLDIACFFKGMDINEVINILENCGDHPKIGIDILIERSLVTLDRMNGKLWMHDLLQEMGKNIVFQESPNDPGKRSRLWSQKDVDHVLTKNKGTDEIRSIVLNLVQPYEARWRAEAFSKINELRLLKLCDMQLPLGLKCLPSALKVLHWRGCPLKTLPLDNQLDEVVDLKLPHSRIEQLWHGTKFMEKLKSIDLSFSKNLKQSPDCVGVSNLESLVLEGCISLTEVHQSLVHHKKLVLMNLKDCRMLKSLPRKMEMSSLKNLSLSGCSEFKYLPEFGACMEHLSMLSLEGTAITKLPSSLGCLVGLALLDLKNCKNLVCLPDTIHKLKSLIVLNVSGCSKIHSLPESLKEIKCLEELNASETAIEELPSFVFSLENLKEISFAGCKGPVSKSMNMFFHPFKWMFGNQQAPTGFRLPPSILGLPSLSYINLSYCNLSEESIPDYFCHLSSLLMLDLTGNNFVSLPSCISKLSKLKYLRVNWCKKLQKLPELPSSIRELDASNCASLETSKFNPSNPCSLFASPTTWYMPSELKKFLEAACLPRARFDMLITGGEIPSWFVPQKCVSFAKVSVPHNCPLTEWVGFALCFMLVSYDDPPGVCPHEVDCYLFGPNGKMFITSRDLPPMEPYYPHLYILYLSIDKFRDRIYGGGAGSEIEFVLKSYCCYSLQIVRCGCRLVCKQDVEDIYRNNFL* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1310 1129 Pfam NB-ARC domain 213 433 IPR002182 GO:0043531
Apr10g1310 1129 Gene3D - 183 344 IPR027417 -
Apr10g1310 1129 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Apr10g1310 1129 Gene3D - 350 434 IPR042197 -
Apr10g1310 1129 Gene3D - 13 182 IPR035897 -
Apr10g1310 1129 Gene3D Ribonuclease Inhibitor 552 717 IPR032675 -
Apr10g1310 1129 Gene3D Ribonuclease Inhibitor 718 961 IPR032675 -
Apr10g1310 1129 SUPERFAMILY L domain-like 504 824 - -
Apr10g1310 1129 Pfam TIR domain 20 185 IPR000157 GO:0007165
Apr10g1310 1129 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 734 947 IPR044974 GO:0006952
Apr10g1310 1129 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 742 IPR044974 GO:0006952
Apr10g1310 1129 PANTHER TMV RESISTANCE PROTEIN N-LIKE 25 742 - -
Apr10g1310 1129 PANTHER TMV RESISTANCE PROTEIN N-LIKE 734 947 - -
Apr10g1310 1129 SMART LRR_typ_2 790 813 IPR003591 -
Apr10g1310 1129 SMART LRR_typ_2 886 909 IPR003591 -
Apr10g1310 1129 SMART LRR_typ_2 719 742 IPR003591 -
Apr10g1310 1129 SMART LRR_typ_2 861 885 IPR003591 -
Apr10g1310 1129 SMART till_3 18 158 IPR000157 GO:0007165
Apr10g1310 1129 PRINTS Disease resistance protein signature 217 232 - -
Apr10g1310 1129 PRINTS Disease resistance protein signature 292 306 - -
Apr10g1310 1129 PRINTS Disease resistance protein signature 385 399 - -
Apr10g1310 1129 PRINTS Disease resistance protein signature 693 709 - -
Apr10g1310 1129 SUPERFAMILY L domain-like 854 945 - -
Apr10g1310 1129 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Apr10g1310 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 444 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1310 Apr-Chr10 25413810 25419204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1310 26 821 WRKY Transcription Factor Family AT4G12020 33.170 3.94e-114 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1310 - - gmx:100815486 1801.56