Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1307 ATGGCTGCTGTTAGGTCTTCATCTGTTAGATGGATAGGAAGTTCAATCAAGGGTTCTTTCAATTTAGAATTACTTCATCAATTCCGCTATCATCATAGTGTGGTTATGAATTTTGCAAGAATTGCAAGGTTGCCAAGTGGTTCACTGGGCCTTCCTTATTCCAAAGGAGGGTTACAGGCAGCTCAAGCTTTTGCTAAGAATGGGTTTAGTAATTTGGCTTCTGAATCCCTTGTAAGTAGTCACTGCTTTGGTACTAGAGACAGTGGCTCATTGAATCCTAGATTCTCTGGCTTTTGTTTTAGGACTACCCTTCCTTTTGCTTCTTGCATGACCCACTTGTTGAATCATCGTATGTATTCATCTTCTTTGGGTGGCAAAGGAAGTAGGGATGGTGGCACAGAAGTTCCTGCTGGTTCTGATGCAAGTGATATGAATGCCAGTGGTGATTCGATTGTTGCGGGTGATTTGGCTGAGAGGGTTAAGGATGCTTGGAAGAGTGTGGTAGAGGCAGCATCAAATGCTGGGCAAAAGGTCAAAGAAACTTCCGATGATCTCACTCCGTATGCTCAACAATTGCTTGATTCACACCCATATCTTAACAAGGTGGTTATTCCAGTTGGTGGTACTTTAACTGCTACTCTAATAGCTTGGTTCTTGATGCCTAAGATTTTAAGGAAATTTCACAAATATGCAATGCAAGGTCCCATCTCTCTATTTCCTGGAAGTATGTCTGGGGAGCCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTATGGAAGATCCAGTGCGTTATTTAGTCACCTTCATGGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACTATAACCTCAGAGTATCTTGCACCTGTTTGGAGGGGTGCAGTGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAGCAAATGTTTTTGCACGGACATTGTCCAGTCAAAGTTTACTTGGACTTGATAGAGAGAAATTACTTGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCCGTGCAATCTATTGTGACTGTCGGTGGTATAGGAGGAGTGGCTACTGCTTTTGCTGCCAAGGACATTCTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCAAAGCCCTTTTCAATTGGAGATACAATAAAAGCTGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACCACATCATTGCTGAGTTCGGAGAAGTTCCCAGTCATTGTGCCAAACACATTTTTTTCTAGCCAGACTGAGGATTTAACTAAGATTCCCGAGATATCAAATGATGTTAAAAGCATGCTAAGATCAAATGCGAAGGTTTTCTTAGGAAAAGACGTTCCCTACTGTTTCTTGTCCCGTATAGAAAGTTCATATGCAGAATTGACTCTTGGATACAACCTTAAACACATGCGCAGAGATGAGCAATACTCTGCCGAACAAGATATTCTTCTGCAGGCGGTTCAGATCATTAAGAATCACGGGGTTGCTCTTGGCAGCACATGGCAAGACATGTCTTCTAAATGA 1584 0.4205 MAAVRSSSVRWIGSSIKGSFNLELLHQFRYHHSVVMNFARIARLPSGSLGLPYSKGGLQAAQAFAKNGFSNLASESLVSSHCFGTRDSGSLNPRFSGFCFRTTLPFASCMTHLLNHRMYSSSLGGKGSRDGGTEVPAGSDASDMNASGDSIVAGDLAERVKDAWKSVVEAASNAGQKVKETSDDLTPYAQQLLDSHPYLNKVVIPVGGTLTATLIAWFLMPKILRKFHKYAMQGPISLFPGSMSGEPVPYEKSFWGAMEDPVRYLVTFMAFSQIGVMVAPTTITSEYLAPVWRGAVILSFVWFLHRWKANVFARTLSSQSLLGLDREKLLALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSSEKFPVIVPNTFFSSQTEDLTKIPEISNDVKSMLRSNAKVFLGKDVPYCFLSRIESSYAELTLGYNLKHMRRDEQYSAEQDILLQAVQIIKNHGVALGSTWQDMSSK* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1307 527 MobiDBLite consensus disorder prediction 124 146 - -
Apr10g1307 527 SUPERFAMILY Sm-like ribonucleoproteins 376 436 IPR010920 -
Apr10g1307 527 Gene3D - 392 438 IPR023408 -
Apr10g1307 527 Gene3D - 287 391 - -
Apr10g1307 527 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 84 523 - -
Apr10g1307 527 Pfam Mechanosensitive ion channel 334 435 IPR006685 GO:0016020|GO:0055085
Apr10g1307 527 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 84 523 - -
Apr10g1307 527 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 289 375 IPR011014 GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1307 158 523 Mechanosensitive Ion Channel Family AT4G00290 61.658 1.17e-180 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1307 K22047 - gmx:100789047 838.565