Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1300 ATGTCAGTATACGACGCCGCTTTTGTCGATACCGAGCTTTCGAAACGCACTTCCATCTTCGGTCTCCGTCTTTGGGTCGTCATCGGAATCCTCGTTGGATCCCTCATCGTTCTCTCTCTATTCCTCCTATCTCTCTGCCTCACCTCTCGCCGTCGCCGCCACCACAACCGCCACAACGCTGCCAAACTCTGCCACCCCACCCCCCTCGTCTCCAAGGAAATTCAGGAGATCGTTCACCTCCCGCCGCTGCCGGAGATCCACCTCGACGTTCCCAAGGTTCCGGTGCTCTCCAGCGGGGAGAGCAAGGGAACCAATAGCGCGTGCGACACCACGTCGTCGCTGGCGAGTGGGAGTGTGGGGCCTGAAGTGTCGCATCTTGGGTGGGGGAGATGGTACACTCTCAGGGAACTTGAAGTTGCCACTGATGGGTTGCGTGAAGAGAACGTTATTGGTGAAGGTGGCTATGGAATCGTTTATCGTGGCTTGCTCCCTGATGGTACCCAAGTTGCTGTTAAGAATCTTTTGAACAACAAGGGCCAAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGCGTGCGGCACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGCATACAGGATGCTTGTGTATGAATATGTTGACAATGGCAATCTAGAACAATGGCTGCATGGGGATGTTGGACCTGTAAGCCCTATGACATGGGATATCCGAATGAACATTATATTGGGCACAGCAAAAGGATTGGCTTATCTTCATGAGGGACTTGAACCAAAAGTTGTCCACCGAGATGTAAAATCTAGTAACATACTCCTTGACCGCCATTGGAACCCAAAGGTTTCCGATTTTGGGCTTGCTAAGCTCCTTTATTCTGAGCATAGTTATGTCACCACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAGTATGCCTGCACCGGAATGCTTACTGAGAAGAGTGATGTGTATAGCTTTGGGATACTTATCATGGAAATAATTACAGGAAGAAGTCCTGTTGATTATAGTAGACAACAAGGAGAGGTTAATTTAATAGAATGGTTGAAAACTATGATTGGGAATCGAAAATCCGAGGAAGTAGTTGATCCTAAGCTTTCTGAAAAGCCATCTCCAAAGGCTCTTAAACGTGCTCTGTTGGTTGCTCTTCGATGTGTTGACCCTGATGCAGCAAAGAGGCCTAAAATGGGACGTGTGATTCACATGCTCGAGGCTGATGACCACTTATTCCGTGATGAACGAAGGATTGGGGGAGAATCTTCTATGTCCCATCGTGACTACCAACTAGAGCATAAGGATTCAAGCATAGATAGAAAGCGAATAGGTGGAGAGATCAGTGATCAAAGTGAAGATGATAGTGGTGGTAGATATCATCATCAGCCTACTAGGTGGAGATGA 1434 0.4798 MSVYDAAFVDTELSKRTSIFGLRLWVVIGILVGSLIVLSLFLLSLCLTSRRRRHHNRHNAAKLCHPTPLVSKEIQEIVHLPPLPEIHLDVPKVPVLSSGESKGTNSACDTTSSLASGSVGPEVSHLGWGRWYTLRELEVATDGLREENVIGEGGYGIVYRGLLPDGTQVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPMTWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRHWNPKVSDFGLAKLLYSEHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRQQGEVNLIEWLKTMIGNRKSEEVVDPKLSEKPSPKALKRALLVALRCVDPDAAKRPKMGRVIHMLEADDHLFRDERRIGGESSMSHRDYQLEHKDSSIDRKRIGGEISDQSEDDSGGRYHHQPTRWR* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1300 477 SUPERFAMILY Protein kinase-like (PK-like) 123 416 IPR011009 -
Apr10g1300 477 Gene3D Transferase(Phosphotransferase) domain 1 220 428 - -
Apr10g1300 477 CDD STKc_IRAK 150 416 - -
Apr10g1300 477 MobiDBLite consensus disorder prediction 432 471 - -
Apr10g1300 477 SMART serkin_6 144 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1300 477 MobiDBLite consensus disorder prediction 432 477 - -
Apr10g1300 477 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
Apr10g1300 477 Gene3D Phosphorylase Kinase; domain 1 124 219 - -
Apr10g1300 477 ProSiteProfiles Protein kinase domain profile. 144 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1300 477 Pfam Protein kinase domain 146 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1300 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Apr10g1300 477 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 459 - -
Apr10g1300 477 PANTHER OS01G0323000 PROTEIN 1 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1300 Apr-Chr10 25330648 25334516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1300 26 416 Trihelix Transcription Factor Family AT5G38560 42.714 1.75e-96 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Apr10g1300 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1300 - - gmx:100777348 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0879 4 7119696 7124000 Apr10g1300 10 25330648 25334516 PCT
Apr4g2269 4 31745862 31749537 Apr10g1300 10 25330648 25334516 PCT