Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1299 ATGGTGTCGGTGAACCCTAATCCAGCTCAAGGCTTTTACTTCTTCGATCCTTCCAATATGGCACTTCCCGGCGTCAATCCCCTTCCTCCGCCACTACCGCCACCTCCTGCTCCCGCCGCCGCATCCTCCGCCGCTGAGGATCCGACTAAGAAGATCCGAAAACCCTACACGATTACTAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAGTTTCTAGAAGCTCTTCAATTATTTGATCGTGACTGGAAAAAGATTGAAGCGTTTGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGCGAACATGTACCTCCTCCGAGGCCAAAAAGAAAAGCTGCTCACCCGTACCCTCAAAAAGCTCCTAAGAGTGCTCATACTGTTTCACAAGCTACGGGCTCATTGCAATCTTCATCTGCTTTCATTGAACCTGCATACATATATAGCCCCGATTCTTCATCTGTGCTCGGAACACCAGTTACTACCATGCCGTTATCATCTTGGAATTATAGTGCTCCACCACCTGTCAATGTGCCACAAGTGACTCGAGATGACATGGGATTGACTGGAGCTGGACAAGCTGTTCCTCATAATTGTTGCTATAGCAGTAGTAATGAGAGCACCCCTCCGGCTTGGCCAAGTAACAAAAGAATTAATCAAGGTGACCAGGCCAAGCCAATTAAAGTAATGCCAGATTTTGCACAAGTCTACAGCTTCATTGGCAGTGTATTTGATCCAAATTCAAGTAATCACCTGCAGAGACTAAGATTGATGGACCCAATAAATGTGGAAACGGTATTGTTGTTGGTTAGAAATCTCTCCATCAATTTAATGAGTCCTGAATTTGAGGATCATAAGAAGCTGCTTTCGTCCTATGTTGCTGACTCCGATAAGTCAAAGTTTGCCAATATTAGCAGCAAATCCCTCACTGATAAATCTGAGAGTGCTGTTCTGTCTGCATAG 1008 0.4514 MVSVNPNPAQGFYFFDPSNMALPGVNPLPPPLPPPPAPAAASSAAEDPTKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKSAHTVSQATGSLQSSSAFIEPAYIYSPDSSSVLGTPVTTMPLSSWNYSAPPPVNVPQVTRDDMGLTGAGQAVPHNCCYSSSNESTPPAWPSNKRINQGDQAKPIKVMPDFAQVYSFIGSVFDPNSSNHLQRLRLMDPINVETVLLLVRNLSINLMSPEFEDHKKLLSSYVADSDKSKFANISSKSLTDKSESAVLSA* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1299 335 SMART sant 61 109 IPR001005 -
Apr10g1299 335 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
Apr10g1299 335 MobiDBLite consensus disorder prediction 24 57 - -
Apr10g1299 335 PANTHER SWI/SNF COMPLEX-RELATED 2 330 - -
Apr10g1299 335 CDD SANT 64 107 IPR001005 -
Apr10g1299 335 PANTHER MYB TRANSCRIPTION FACTOR 2 330 - -
Apr10g1299 335 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Apr10g1299 335 MobiDBLite consensus disorder prediction 111 147 - -
Apr10g1299 335 ProSiteProfiles SANT domain profile. 60 113 IPR017884 -
Apr10g1299 335 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Apr10g1299 335 MobiDBLite consensus disorder prediction 24 41 - -
Apr10g1299 335 Gene3D - 65 112 - -
Apr10g1299 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Apr10g1299 335 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1299 Apr-Chr10 25306000 25312886 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr10g1299 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1299 - - gmx:778090 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1299 10 25306000 25312886 Apr10g1299 10 25306000 25312886 ECH
Apr10g1299 10 25306000 25312886 Apr4g2273 4 31777562 31782804 ECH
Apr4g2273 4 31777562 31782804 Apr10g1299 10 25306000 25312886 PCT