Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1297 ATGGGAGATATAGAAAGAGAAGCAATGTTAGAGCGGGAGAAGGAAGAAGAAGAAGAGGAAGAAGCACAAGCCCAAGTGGATATTTGGAGGTACATATTTGGGTTTGTGGAACTGGCAGTGGTGAAATGTGCCATAGAACTGGGCATAGCTGAAGCCATAGAAGCTCATGGAAGACCCATGACACTGTCGGAGATATCAACAACTCTAGGCTGTGATCCTTCACTTCTGAACCGCATCATTAGGTTCCTCACACACCGAAAGATATTCAAAGCCATACCCACCAGCCATGGCTACCCGGGCTATGCTCAAACACCTTTGTCTCGGCGTTTGATGAGAACGGGACAACATAGCATGGCAGCTCTTATTTTGCTGGAGAGTAGTCCTGTAATGCTAGCACCGTGGCATTGCCTAAGTGCTCAGGTCTTGGCCAATGGCAATCCCTCATTTGAAAAGGCTCACGGTGAAGATTTGTGGCGCTATGCTGCGACAAATCTTGATCACAGCAATCTCTTCAATGAAGCAATGGCATGTGATTCTAAGCTTGTTATGCCTATTATCATTGAAAGTTGCAGCGAGGCATTTGATGGTCTCAACTCCTTGGTGGATGTGGGTGGGGGCAACGGCACCACCACGAGCGTCCTTGTTAAGGCTTGCCCTTGGATTCGAGGAATCAATTTTGATCTTCCTCATGTCATTGCTGAGGCTCCAAAGTGTGATGGGGTGGAACATGTTGCAGGCGACATGTTTCAAAGCGTTCCCAAAGCTGATGCTGCTTTTCTTAAGTGGGTTTTGCACGACTGGAGAGACGAAGAGTGCATCGAGATCTTGAAGAAATGCAGGGAAGCTGTTCCTAAGGAAAATGGAAGGGTTGTTATTGTGGAGGCAGTGATTGAAGGTGGAAAGCATGATGGGTTGAAGGATGTAGGATTGATGCTGGACATGGTAATGATGGCGCATACTAATTTTGGCAAGGAGCGTACCCTCAAAGAGTGGGAATATGTCATTCAAATGGCAGGATTTAGCAAATACACTGTGAAAACCATCCATGCTGTGCAGTCTGTCATTATTGCTTTCTACTAA 1080 0.4648 MGDIEREAMLEREKEEEEEEEAQAQVDIWRYIFGFVELAVVKCAIELGIAEAIEAHGRPMTLSEISTTLGCDPSLLNRIIRFLTHRKIFKAIPTSHGYPGYAQTPLSRRLMRTGQHSMAALILLESSPVMLAPWHCLSAQVLANGNPSFEKAHGEDLWRYAATNLDHSNLFNEAMACDSKLVMPIIIESCSEAFDGLNSLVDVGGGNGTTTSVLVKACPWIRGINFDLPHVIAEAPKCDGVEHVAGDMFQSVPKADAAFLKWVLHDWRDEECIEILKKCREAVPKENGRVVIVEAVIEGGKHDGLKDVGLMLDMVMMAHTNFGKERTLKEWEYVIQMAGFSKYTVKTIHAVQSVIIAFY* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1297 359 Gene3D Vaccinia Virus protein VP39 112 358 IPR029063 -
Apr10g1297 359 Pfam O-methyltransferase domain 134 341 IPR001077 GO:0008171
Apr10g1297 359 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 13 358 - -
Apr10g1297 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 356 IPR029063 -
Apr10g1297 359 Gene3D - 10 110 IPR036388 -
Apr10g1297 359 CDD AdoMet_MTases 200 293 - -
Apr10g1297 359 SUPERFAMILY "Winged helix" DNA-binding domain 18 113 IPR036390 -
Apr10g1297 359 Coils Coil 1 27 - -
Apr10g1297 359 PANTHER O-METHYLTRANSFERASE 13 358 IPR016461 GO:0008168
Apr10g1297 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 359 IPR016461 GO:0008168
Apr10g1297 359 PIRSF O-mtase 6 359 IPR016461 GO:0008168
Apr10g1297 359 Pfam Dimerisation domain 40 84 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1297 Apr-Chr10 25288283 25289597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1297 41 345 Monolignol Biosynthesis Gene Families AT5G54160 38.413 7.88e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1297 K22588 - gmx:100782951 531.561