Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1293 ATGGTGGACGGTGGCGACTTCGCCGGCACCATTTGTTCGATCTGCTACGAACCTCTCAAGCCCATTAACGAAGACCTTCAATCTATCTCCATCTGCGGCCATGTCTTCCACGAGCTCTGCCTGCAACAATGGTTCGAGTACTGCTCGAGATCGAAGAAGCACACTTGCCCCGTTTGCAAGCAGAGCTGCAAGGCCAGCAATGCGTGCAGGCTTTATTTTCAATCAGTTGGAGATGTGAGTGATGGTATTGTTCCTCCGAAGAGCGTTGATTTGGAGGAAGATGTTGGGGTTCTGCGCAGGGAAGTGAAGAGATTGGAGGTGCAAGTCTCGGGGCTTAGTTCCATGTTGGAACGCCAAACAAAAGAATTAGAAGGACTTAACGAGGAGCTTTGTGCTTGCAAGGAGCAAGGTAAGATAGAAACAGCATTAAAGAATGAGGCCTTGAGTCAAAAGGCATCCATACAATTCCAGCTACGTATGAAATCAGAGGAGCTTGAAAAGTCAACTCTGGAATGTTTTAGATTACAAGATAGGAATATGGCTTTGGCAAAAGAACTTGCATCATTGAAATTGGTGTCTGATCTGGACCTTGATGAAGATGAAGTTTTAAAGCTTGCCACTTTGGGTAACGGGGCCAATAGTAAAGATACAATAGACACATTGAAAAGATCTCTGGTCTTGCGGAACAGGAGTTACAAAGAATTAATGGCCAAGTGCAATGATTTGGGAAGAGGTGAGTCTCGTTACAGCAAAAAGCTTGAAAAGGCTAAAGAGAAGATCACTAAACTGAAGGTGAGGGTACAAGAACTGGAAACATCTGCTGTAGAGAAAGAGAATGAATATCAGATATCTCTGAAACTTTCAAAGAAAGCAAGGCGTTCAAAGAATATTGAAAGTAACATGAATTGTAATTCTGATGTATTGACAACTTGCAAATATTCATCAAAAGAGCAAAGCATAGATATATCAACACCCAAATCTGGAAGGGATCTGACTGCAAATGATGACAATAATTTTTTACAATCTTTGAAGATAGAGAGCTCCAATGCTGCTGAAAGTAAGATTGTAAATATTAGTAATGCAAGTAAAACTACATTGTCTCTTGATAATGGGAGAGACTATATCGTAATTGATGAAGATGCCTCAGAATGCACTAAAGCTTTTCAAGGGCATCAAAAACACAACTTTGGTGATCATGAGAGGGATGATATTGCTTGTAGCAAGCCTTCTCTAGCAAAGCCAGAAACAGTGTCTGGCATAAAGACTGAAACATGGCAGGGAAAATGTAATTTTGCTGAGTCTTCAAGAGTTGATATTGACATTGACACGGCTAACATTTCAGCTGGTGCTATGGATGAAGATGTGACTTTACCGGCCAACATTAAACAAGTTCAACCCATCGTTAACATTATAAAGGAGTCACCATTAACACATTCAAATTCAGCTCCAGTGGACATCTGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACACATCGATACTTGGGTAAATGGTGCAAACGTGGACAAAACAATGAATCAACATCTAAACGTTCAACGAATGGGGATTTGATAACTGTTGGGGCAGATGGTAGGGGTGGCAGAATAAAGGTTCTAAGGACTTCTAGCCAAATCTTGTCGGATGGTAAGGATTATTCAGTAAGTTCAAAAAGGTCGAAGTTTGCATCCAAAACAAGTAGTCTGCAATCCAAGGGGTGCCTGCAGATAGAACACTTTTTTGGGAGAGTCAGTCAGTAA 1758 0.4147 MVDGGDFAGTICSICYEPLKPINEDLQSISICGHVFHELCLQQWFEYCSRSKKHTCPVCKQSCKASNACRLYFQSVGDVSDGIVPPKSVDLEEDVGVLRREVKRLEVQVSGLSSMLERQTKELEGLNEELCACKEQGKIETALKNEALSQKASIQFQLRMKSEELEKSTLECFRLQDRNMALAKELASLKLVSDLDLDEDEVLKLATLGNGANSKDTIDTLKRSLVLRNRSYKELMAKCNDLGRGESRYSKKLEKAKEKITKLKVRVQELETSAVEKENEYQISLKLSKKARRSKNIESNMNCNSDVLTTCKYSSKEQSIDISTPKSGRDLTANDDNNFLQSLKIESSNAAESKIVNISNASKTTLSLDNGRDYIVIDEDASECTKAFQGHQKHNFGDHERDDIACSKPSLAKPETVSGIKTETWQGKCNFAESSRVDIDIDTANISAGAMDEDVTLPANIKQVQPIVNIIKESPLTHSNSAPVDICFSGGLLGPDGTHRYLGKWCKRGQNNESTSKRSTNGDLITVGADGRGGRIKVLRTSSQILSDGKDYSVSSKRSKFASKTSSLQSKGCLQIEHFFGRVSQ* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1293 585 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Apr10g1293 585 CDD RING-H2 12 60 - -
Apr10g1293 585 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 584 - -
Apr10g1293 585 Coils Coil 246 280 - -
Apr10g1293 585 SUPERFAMILY RING/U-box 11 64 - -
Apr10g1293 585 Pfam Ring finger domain 11 60 IPR001841 -
Apr10g1293 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 179 IPR013083 -
Apr10g1293 585 SMART ringv_2 11 60 IPR011016 GO:0008270
Apr10g1293 585 SMART ring_2 12 59 IPR001841 -
Apr10g1293 585 Coils Coil 88 129 - -
Apr10g1293 585 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 584 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1293 489 585 C3H Transcription Factor Family AT4G01270 48.544 1.10e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1293 K11985 - gmx:100812811 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1293 10 25220971 25225157 Apr10g1293 10 25220971 25225157 ECH