Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1292 ATGATCATGGAAGATGATTGGGATCTCCACGCCGTGGTCAGAGGCTGCACCACCATTACCACCACCTCTTCCACCACCAACTCCTCCTCTGTTTCTTCCTCTGCCTTTGGCACTTGTAGTCTACCTTCAACTTCTTGTAGCTTCTTCTCTACTTTACCTTCTGAACAAAAGGGTCAAGTTTTGTCTCTCTCAAACCCGTCTGAGGCAAGAAGTTCCATAGAAGAACTTCATGAACTTTGCAAGCCTTTCTTCCTCAAGTCACAGCCTTTTCAAACCTCTTCTCCACTCTCTTCTTTTTCTTATTCATCTGCACCCAAATCTCCTCACACACAGCAAGAACAAAAGCAGCCAAATAAGGTCCCTCATCAAGATGGTTCAGCCACCGCCCCACGATCCAAAAGAAGGAAGAATCAGCTTAAGAAAGTTTGTCAAGTGCCAGCTGAGAATCTGTCATCAGATATATGGGCATGGAGGAAATATGGTCAAAAACCCATCAAAGGGTCACCATATCCAAGGGGATATTATAGATGTAGTAGCTCAAAAGGATGCTTAGCTCGGAAACAAGTGGAGAGGAACAGATCAGACCCAACAATGTTCATAGTCACATACACGGGTGAACACAACCACCCTGCTCCAACTCATAGAAACTCCCTTGCTGGTTCCACACGCCAAAAGCCACAAACAAAACCTATTTCTCCTGCAGCCTCAGGGGTGGAAGAAGAGGTTGTAGCACAGTTGAGTGCAAAGTCAGAGAGCACAGAAGACATGGAAGATCTGATGATAGATGATGATGAGGAACAAAATGAATTTGTGCTATCAGATATGGTGGTAACAGATGATTTCTTTGAAGGGTTAGAAGAATTCACAGGGTCTATTGCAACTGATACCTTTACAGCTAGTAGTAGTAGTAGTAGTATTGTTCGGTGGCCACAGGCCAACAATGCTGCTACTGCCGCTGGTGGCAGCTGA 969 0.451 MIMEDDWDLHAVVRGCTTITTTSSTTNSSSVSSSAFGTCSLPSTSCSFFSTLPSEQKGQVLSLSNPSEARSSIEELHELCKPFFLKSQPFQTSSPLSSFSYSSAPKSPHTQQEQKQPNKVPHQDGSATAPRSKRRKNQLKKVCQVPAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTGEHNHPAPTHRNSLAGSTRQKPQTKPISPAASGVEEEVVAQLSAKSESTEDMEDLMIDDDEEQNEFVLSDMVVTDDFFEGLEEFTGSIATDTFTASSSSSSIVRWPQANNAATAAGGS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1292 322 MobiDBLite consensus disorder prediction 206 256 - -
Apr10g1292 322 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 3 321 - -
Apr10g1292 322 MobiDBLite consensus disorder prediction 96 140 - -
Apr10g1292 322 MobiDBLite consensus disorder prediction 209 231 - -
Apr10g1292 322 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 321 IPR044810 GO:0003700
Apr10g1292 322 SMART WRKY_cls 151 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g1292 322 MobiDBLite consensus disorder prediction 298 322 - -
Apr10g1292 322 Pfam WRKY DNA -binding domain 153 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g1292 322 Gene3D WRKY domain 135 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr10g1292 322 ProSiteProfiles WRKY domain profile. 146 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g1292 322 MobiDBLite consensus disorder prediction 96 125 - -
Apr10g1292 322 SUPERFAMILY WRKY DNA-binding domain 148 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1292 Apr-Chr10 25202946 25204662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1292 3 321 WRKY Transcription Factor Family AT4G01250 47.576 5.68e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr10g1292 WRKY 6.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1292 K13425 - gmx:100815829 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1292 10 25202946 25204662 Apr6g0635 6 9316442 9317982 ECH
Apr10g1292 10 25202946 25204662 Apr10g1292 10 25202946 25204662 ECH
Apr10g1292 10 25202946 25204662 Apr4g2277 4 31843455 31845442 ECH
Apr2g1236 2 18598087 18599336 Apr10g1292 10 25202946 25204662 ECH
Apr4g2277 4 31843455 31845442 Apr10g1292 10 25202946 25204662 PCT