Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1260 ATGGCTTATGTTAAGGCTCAGAAAACAAAGGCCTACTTCAAGAGATATCAAGTGAAGTTCAAGAGAAGAAGAGAGGGAAAAACTGATTACCGAGCTCGGATTCGGTTAATTAATCAGGACAAGAACAAGTACAACACCCCTAAATACCGCTATGTGACCAACAAGGACATCACTGCACAAATAGTATCTGCTAGCATTGCTGGTGATATTGTTCTTGCTGCAGCATACTCACATGAGCTGCCACGCTATGGCTTGAAAGTAGGCCTTACAAACTATGCCGCAGCTTACTGCACTGGACTCTTATTGGCCCGAAGAGTCCTGAAAATGCTTGAAATGGATGAGGAGTATGAGGGAAATGTTGAGGCTACTGGAGAGGATTTTTCTGTGGAACCTGCTGAGACCAGGAGGCCATTCCGTGCTCTCCTTGACGTTGGTCTTATTAAAACCACAACTGGCAATCGTGTCTTTGGTGCCCTTAAGGGAGCTTTGGATGGTGGTTTGGATATTCCTCACAGTGAGAAAAGGTTTGCTGGCTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATATCTTTGGGGGACATGTTGCCGCTTATATGAAGACATTGATGGAGGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATATATCAAGCAAGGAATAGATGCTGATGGTCTTGAGGGGCTGTACAAGAAGGTCCATGCAGCAATTCGTGCAGATCCTACTATCAAGAAATCTGAGAAGGAGCCACCAAAGGAACACAAGAGGTACAACTTGAAGAGGCTTACTTATGAAGAGAGGAAGGCTAAGTTGATAGCTCGCTTGCAGGCTCTCAACTCTGCTGCTGATGGTCCTGAGGATGACGATGAGGATGACGAGTGA 900 0.4522 MAYVKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRYVTNKDITAQIVSASIAGDIVLAAAYSHELPRYGLKVGLTNYAAAYCTGLLLARRVLKMLEMDEEYEGNVEATGEDFSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFDKEKKELDAEVHRKYIFGGHVAAYMKTLMEDEPEKYQSHFSEYIKQGIDADGLEGLYKKVHAAIRADPTIKKSEKEPPKEHKRYNLKRLTYEERKAKLIARLQALNSAADGPEDDDEDDE* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1260 299 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 295 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1260 299 SUPERFAMILY Translational machinery components 11 249 - -
Apr10g1260 299 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1260 299 PRINTS Ribosomal protein L5 signature 81 101 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1260 299 PRINTS Ribosomal protein L5 signature 141 160 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1260 299 PRINTS Ribosomal protein L5 signature 161 180 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1260 299 PRINTS Ribosomal protein L5 signature 203 223 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1260 299 CDD Ribosomal_L18_L5e 41 167 - -
Apr10g1260 299 Hamap 50S ribosomal protein L18 [rplR]. 14 243 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1260 299 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 172 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1260 299 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 295 - -
Apr10g1260 299 Pfam Ribosomal L18 C-terminal region 232 285 IPR025607 -
Apr10g1260 299 MobiDBLite consensus disorder prediction 247 266 - -
Apr10g1260 299 Gene3D - 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1260 Apr-Chr10 24974322 24977080 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1260 1 288 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 80.069 6.22e-176 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1260 K02932 - gmx:100785668 520.39