Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1259 ATGGCTTATGTTAAGGCTCAGAAAACAAAGGCCTACTTCAAGAGATATCAAGTGAAGTTCAAGAGAAGAAGAGCGGGAAAGACTGATTACCGAGCCAGGATTCGGTTAATTAATCAGGACAAGAACAAGTACAACACCCCGAAATACCGCTTTGTGACCAACAAGGACATCACTGCACAAATAATATCTGCCAGCATTACTGGCGATATTGTTCTTGCTGCGGCATACTCGCATGAGCTGCCGTGCTATGGCTTGAAAGTAGGCCTTACAAACTATGCCGCAGCTTATTGCACTGGACTCCTATTGGCCCGGAGAGTCCTTAAAATGCTTGAAATGGATGAGGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTTTTCTGTTGAACCTGCTGAGACCAGGAGACCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAAAACCACAACTGGCAATCGTGTCTTTGGTGCCCTTAAGGGAGCTTTGGATGGTGGTTTGGATATTCCTCACAGTGAGAAAAGGTTTGCTGGCTTTGACAAAGAGAAGAAAGAGCTTGATGCTGAGGTTCATCACAAATATATCTTTGGTGGACATGTTGCTGCCTATATGAAGATGTTGATGGAAGATGAACCAGAGAAATATCAGTCACACTTCAGTGAATATATCAAGCAAGGAATAGATGCTGATGGTATTGAGGGGCTGTACAAGAAGGTTCATGCAGCGATTCGTGCAGATCCTACTATCAAGAAATCTGAGAAGCAGCCACCAAAGGAACACAAGAGGTACAACTTGAAGAAACTTACATATGAGGAGAGGAAGGCCAAGTTGATTGCTCGCTTGCAGGCTCTCAACTCTGCTGCTGATGGTGCTGAAGATGACGATGATGATGATGAGTGA 900 0.4456 MAYVKAQKTKAYFKRYQVKFKRRRAGKTDYRARIRLINQDKNKYNTPKYRFVTNKDITAQIISASITGDIVLAAAYSHELPCYGLKVGLTNYAAAYCTGLLLARRVLKMLEMDEEYEGNVEATGEDFSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFDKEKKELDAEVHHKYIFGGHVAAYMKMLMEDEPEKYQSHFSEYIKQGIDADGIEGLYKKVHAAIRADPTIKKSEKQPPKEHKRYNLKKLTYEERKAKLIARLQALNSAADGAEDDDDDDE* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1259 299 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1259 299 PRINTS Ribosomal protein L5 signature 81 101 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1259 299 PRINTS Ribosomal protein L5 signature 141 160 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1259 299 PRINTS Ribosomal protein L5 signature 161 180 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1259 299 PRINTS Ribosomal protein L5 signature 203 223 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1259 299 Coils Coil 267 294 - -
Apr10g1259 299 CDD Ribosomal_L18_L5e 41 167 - -
Apr10g1259 299 Hamap 50S ribosomal protein L18 [rplR]. 14 243 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1259 299 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 294 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Apr10g1259 299 Pfam Ribosomal L18 C-terminal region 232 285 IPR025607 -
Apr10g1259 299 Gene3D - 1 288 - -
Apr10g1259 299 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 294 - -
Apr10g1259 299 SUPERFAMILY Translational machinery components 11 249 - -
Apr10g1259 299 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 172 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1259 Apr-Chr10 24960222 24964020 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1259 1 288 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 80.069 2.27e-175 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1259 K02932 - gmx:100805868 515.768