Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1250 ATGAGCACTCAGTCACAACAACAACAACCACCACAACAACAACATAACAAAAGAGAATTCAAAGAAGAAGAAAACCGGTTGCTACCATCAGAATGCGAGACAATACCATTGTCCTCAGCCTCTTCATCACCCTCAAAGTGGGAACTTGGAAACCAAGAAGAAGAAGAAGAAAATACGGTGTATGCAGCCAAGGACAAGGTGCAGATATTTGACTTAGAGTCCACAGGCGCGGCGGGATCCACGGCGGTGCCACCGTTTTCATGGAAGAAGCTGTGGTTGTTCACAGGGCCAGGGTTGTTGATGAGTGTGGCTTTTTTGGACCCAGGAAACCTTGAAGGTGATCTTCAAGCTGGTGCAATTGCTGGGTATTCTTTGCTTTGGTTGTTGATGTGGTCAACGATAATGGGTTTGGTGATTCAACTTCTGTCCGCAAGGCTTGGGGTGGCCACAGGGCGCCACCTGGCAGAGCTGTGTAGGGAGGAGTATTCCAATTGGGCCAGGTTGACTCTTTGGTTCTTGGCTGAGTTGGCTCTCATTGCTGCTGATATTCAAGAAGTTATTGGTAGTGCTATTGCTTTTAAGATTCTTAGCCATGGGCTTCTCCCCATTTGGGCAGGTGTGGTTATCACTGCCATGGATTGTTTCTTCTTTCTATTTCTTGAGAATTATGGAGTGAGGAAGTTAGAAGGAGTTTTCGCAGTTTTCATTGGAACTATGGCCTTTTCCTTTGCGTGGATGTTCTTTGACACAAAGCCCAGTAAAGAAGAATTAATGATGGGTCTTTTGATCCCAAGAGTTAGTTCAAAAACACTTCGGCAGGCAGTGGAAATTGTGGGTTGTGTTATAACGCCACATAATGTGTTCCTCCATTCTGCATTGGTGCAATCAAGGGACATTGATATCCGTAACAAAGGGCAGGTTCAAGAGGCTCTCAACTACTACTCAATTGAGTCCTCAGTTGCACTTTTAATCACCTTGGTGATCAATCTATCTGTGATAACTGTTTTTGCTAGGGTGTTCTATGGAACAGAACAAGCCAACGGCATAGGATTGGTAAATGCAGGACAATATCTTGAGGAGAGGTATGGGGGAGGGTTGTTTCCAATTCTTTATATATGGGGTATCGGTTTGTTAGCAGCTGGACAAAGTAGCACTATCACTGGCACATATGCTGGACAGTTTATCACTGAGGGTTTTCTTAAACTCAATATAAAGAAGTGGTTGAGAGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGGTTGTTGCAATTGTCTTTAATACATCAGAAGGTTCATTGGATACCTTGAATGAATGGCTTAATGTGCTCCAAGCTATACAGATTCCCTTTGCACTTATCCCCCTTCTTACTTTGGTGTCCAAAGAGGAGGTCATGGGGACCTTTAGAATAGGGCCTATAGTTCAGAGAGTGGCTTGGACTGTGGCTGTGCTGGTAATAATGGTTTATGGATATATGTTGTTAGATTTCTTCCTAGAGGAAGTGCATGGACTATTGTTTGGTTTTCTAGTCTTCCTTGGCGCTTCAGCATGGATTTCATTTATTATATATCTACTTCAGCATAGTGGTGCAATTCCTTTCTTGATGAGGTCCCCTAATTCTAGAGGATTTTTTTCTCTTGCTGGGAACTAA 1656 0.4336 MSTQSQQQQPPQQQHNKREFKEEENRLLPSECETIPLSSASSSPSKWELGNQEEEEENTVYAAKDKVQIFDLESTGAAGSTAVPPFSWKKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLVIQLLSARLGVATGRHLAELCREEYSNWARLTLWFLAELALIAADIQEVIGSAIAFKILSHGLLPIWAGVVITAMDCFFFLFLENYGVRKLEGVFAVFIGTMAFSFAWMFFDTKPSKEELMMGLLIPRVSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEALNYYSIESSVALLITLVINLSVITVFARVFYGTEQANGIGLVNAGQYLEERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMVVAIVFNTSEGSLDTLNEWLNVLQAIQIPFALIPLLTLVSKEEVMGTFRIGPIVQRVAWTVAVLVIMVYGYMLLDFFLEEVHGLLFGFLVFLGASAWISFIIYLLQHSGAIPFLMRSPNSRGFFSLAGN* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1250 551 MobiDBLite consensus disorder prediction 32 48 - -
Apr10g1250 551 Hamap Divalent metal cation transporter MntH [mntH]. 77 499 IPR001046 GO:0016020|GO:0030001|GO:0046873
Apr10g1250 551 MobiDBLite consensus disorder prediction 15 29 - -
Apr10g1250 551 MobiDBLite consensus disorder prediction 1 58 - -
Apr10g1250 551 PRINTS Natural resistance-associated macrophage protein signature 170 196 IPR001046 GO:0016020|GO:0030001|GO:0046873
Apr10g1250 551 PRINTS Natural resistance-associated macrophage protein signature 200 219 IPR001046 GO:0016020|GO:0030001|GO:0046873
Apr10g1250 551 PRINTS Natural resistance-associated macrophage protein signature 225 246 IPR001046 GO:0016020|GO:0030001|GO:0046873
Apr10g1250 551 PRINTS Natural resistance-associated macrophage protein signature 274 297 IPR001046 GO:0016020|GO:0030001|GO:0046873
Apr10g1250 551 PRINTS Natural resistance-associated macrophage protein signature 381 400 IPR001046 GO:0016020|GO:0030001|GO:0046873
Apr10g1250 551 PRINTS Natural resistance-associated macrophage protein signature 409 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Apr10g1250 551 PRINTS Natural resistance-associated macrophage protein signature 443 462 IPR001046 GO:0016020|GO:0030001|GO:0046873
Apr10g1250 551 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 46 551 IPR001046 GO:0016020|GO:0030001|GO:0046873
Apr10g1250 551 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 89 467 IPR001046 GO:0016020|GO:0030001|GO:0046873
Apr10g1250 551 Pfam Natural resistance-associated macrophage protein 112 473 IPR001046 GO:0016020|GO:0030001|GO:0046873
Apr10g1250 551 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 46 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1250 Apr-Chr10 24911340 24914617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1250 54 530 Inorganic Solute Cotransporters AT1G47240 73.904 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1250 K21398 - gmx:100801411 939.873