Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1244 ATGACAACAGCAAATGGTGGGGCAGGGACTGAGGAGCACAAGAGAAAAACCAATGATCCTTTTCTCAAGTCCCCTGGGCACCAAAATATGCCCAAATCACCTAGATTGTGCACACCTATAAGGAAGGAATGGCCAGAGAGTTTGCCAAATGACAATACAATTGGTAATGAGGATAATGGATTGAATAGATATGTTACTTCCTTAGCTGGATCTGGACCTCCTGGTACTAATTTTTGTTCCACAATTGATTCTGAACACATTGTTGAAGAATTACCTGTTAGGAATTATAAGAATCAGAATATAGATGTAGTTAACCACCCGCATAATTCAAGACAGCCTCTGAGGAATCAATTGGCTATTGAGTCTAAGTATAATAGCTTGAGTAGAGAAATTGTACCCAAGGTTGAATTACAGATACCACTCAAATTAAGCAAAGGACTAAAGGGAATTGATTCCGAAATTTGGGGCCTGAAATCTCTGCCACTGAAAGTGTCTGCAGATATAAGCAATAGGAATAAGACTATCACCTCAAGCAATGCACATCTGAATAGCAGTAAAACGCATAATACTTTGTCTGCATATAATTGTCCTCAATTGGTTGCAGAGCAAACAGTGAAGGGAAAGGGTGTTATTTGCAAAGATTTAGACAAAAACTTTGGTCTTGGAGGAGTGCTTATGAGCCAAGAGGATGAGAAACCTGCTTTTGCAACTAAGCTTCAACATGACACGCTGCTGAGACCAAATGTGGTTGATAATAACCCTTCCTTAAAAGAAACAGCCGTGATGTGCGCAGAATCTTCTAATGATGCACTCAACTTAAGAGAGTGGATTAAGTCTGAAGATCATATAATGAAGAAATCAGTAAGGCTACAAATATTTAAGCAGATCTTGGAAATGGTTGATTTTGCACACTCCCAAGGAAATGTCTTGAAAGATTTGAAACCATCTTGTTTCTCTTTACTGCCTTCAAGTAAAATTAAATATATTGGTTCATATGGCCACCGAGAATTAGATAATGAAGTCATGAAGCGCAATGTGACTTGGAAAAGGCCTCTGGAACAGGATATCGGTGCTTGCCAAAGTTTGAGTACAAAGCAGCAAAAGCTCTGTGAGGAGACAGGATCTTTTAGGCAGCAGCATCACTTCACCTGTATTCATGGCTCCAGGACAATGGTGAATCAAACTGACTCTGACACAAATGGATCCATGGAATCAAGGAACAAAGAAAGTTTGTACCAAAATGATTCTAGTCATCAATGCACTTACACTGATGAAAAGCAGTATATGTCTGTAACCATTCAGTTAGAAGATAAATGGTATTGTAGTCCAGAAGTGCTAAATGGTGGACCTTGCACATTTTCATCAAATATTTATAGCCTTGGAGTTCTTCTTTTTGAGGTAAGCAGATATTTTTTGCTGTGCAACATTGAATCATGGGAGGCACATTCAACTATGATGTTGGATTTGTCTTGTAGAATCTTACCACCAAAATTTCTATCAGAAAACCCAAAGGAAGCTGGTTTTTGTCTTTGGCTTCTGCATCCTGAGCCATCTTCTCGCCCCATCACCAGGATGATTTTAGAATCTGAATTCATATGCGAATCAGAGGAATCAAGTTCTGGAGAAGATGTTGTAGTATCTGATGATGATGAGACTGAAACAGAGCAATTAATACACTTTCTAATTTCACTCAAAGAAGAAAAGAAAAAACAGGCAGCCAAGTTGGAAGAACAGCTAAATTGCTTGAATGAAGATATTAAGGGGGTTGAAAGAAGTTATTCATTTGGAATAGATTCAGTATTTCACATAGCACAAATGAACAATCCTGAATTGAGAGGAAATAGTTTACATTTTCAAGACTCTTCCATCTCAGATATTAATACATCTATTCCACGATCATTTGTTGATGAAGAAAGATTCATGAGTAATATAAATCAATTAGAGAATTCTTACTTTTCGACAAGATTCAAAGTCCTTGCAAAAGAGGCATCAGCTGTTTTAAACAATGATAAAAATGTGGTGGAAAGTAGATGGAGGTTGTCTCATGTAGAGAATGTTAATAAGGAGCCTAGAGGAATTCAGAATTCTGTTGGTTGCCTGGGATCCTTCTTTGAAGGTTTATGGAATTTTGCTCGTTACAGCAAGTTTGAAGAGTGTGGCACATTAAGAAACAGAGATCTTCTTAGTTCTGCTAATGTAATGTGTGCTTTAAGTTTTGATCGGGACGAGGATCACATTGCAGCAGGTGGAGTTTCAAAGAAAATAAAGATTTTCGATCTCAACTCTATTTCAAGTGATTCTATTGATATCCAGTACCCAGTAGTTGAGATGTCAAATAAATCAAAGCTTAGCTGTGTTTGCTGGAACAGTTATATAAAAAATCATCTGGCTTCTACTGATTATGATGGTGTAGTTCAGATGTGGGACGCAGACACTGGTCAGCCATTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTCTGGCAGACCCAAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTGTCAAACTGTGGAATATCAGCGAGAGAAACTCTATGGGAACCATCTGGAACCCTGCCAATATATGCTGTGTTCAGTTCTCTGCTTACTCAACAAATCTTTTATTTTTCGGATCAGCTGATTACAAAGTATATGGTTATGATCTTCGTCACACAAGAATCCCTTGGTGCACATTATCTGGTCATGGTAAAGCTGTTAGCTATGTAAAATTTATAGATGCTGAAACAGTTGTCTCTGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTGAATAAGACCAGCTCTTCGGCGTTGTCATCTGATGCTTGTGTCTTAACCTTTAAAGGTCATAGTAATGAAAAGAATTTCGTGGGATTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATCTCTGCCAGTGCCGATCGCTACTCATAAATTTGAGTCAATTGATTCCATTTATGGTCATCCAAATAGTGGTGATAATAGGGGACAGTTTGTTTCAAGCGTTTGTTGGAGAAAGAAGTCTAACATGCTTGTTGCTGCCAACTCAGTTGGAATAGTAAAACTATTGCAGATGGTCTGA 3138 0.383 MTTANGGAGTEEHKRKTNDPFLKSPGHQNMPKSPRLCTPIRKEWPESLPNDNTIGNEDNGLNRYVTSLAGSGPPGTNFCSTIDSEHIVEELPVRNYKNQNIDVVNHPHNSRQPLRNQLAIESKYNSLSREIVPKVELQIPLKLSKGLKGIDSEIWGLKSLPLKVSADISNRNKTITSSNAHLNSSKTHNTLSAYNCPQLVAEQTVKGKGVICKDLDKNFGLGGVLMSQEDEKPAFATKLQHDTLLRPNVVDNNPSLKETAVMCAESSNDALNLREWIKSEDHIMKKSVRLQIFKQILEMVDFAHSQGNVLKDLKPSCFSLLPSSKIKYIGSYGHRELDNEVMKRNVTWKRPLEQDIGACQSLSTKQQKLCEETGSFRQQHHFTCIHGSRTMVNQTDSDTNGSMESRNKESLYQNDSSHQCTYTDEKQYMSVTIQLEDKWYCSPEVLNGGPCTFSSNIYSLGVLLFEVSRYFLLCNIESWEAHSTMMLDLSCRILPPKFLSENPKEAGFCLWLLHPEPSSRPITRMILESEFICESEESSSGEDVVVSDDDETETEQLIHFLISLKEEKKKQAAKLEEQLNCLNEDIKGVERSYSFGIDSVFHIAQMNNPELRGNSLHFQDSSISDINTSIPRSFVDEERFMSNINQLENSYFSTRFKVLAKEASAVLNNDKNVVESRWRLSHVENVNKEPRGIQNSVGCLGSFFEGLWNFARYSKFEECGTLRNRDLLSSANVMCALSFDRDEDHIAAGGVSKKIKIFDLNSISSDSIDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDADTGQPLSQYMEHQKRAWSVHFSLADPKMFASGSDDCSVKLWNISERNSMGTIWNPANICCVQFSAYSTNLLFFGSADYKVYGYDLRHTRIPWCTLSGHGKAVSYVKFIDAETVVSASTDNSLKLWDLNKTSSSALSSDACVLTFKGHSNEKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPIATHKFESIDSIYGHPNSGDNRGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1244 1045 SUPERFAMILY WD40 repeat-like 733 1042 IPR036322 GO:0005515
Apr10g1244 1045 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 905 938 - -
Apr10g1244 1045 Coils Coil 558 592 - -
Apr10g1244 1045 Gene3D - 704 1045 IPR015943 GO:0005515
Apr10g1244 1045 SUPERFAMILY Protein kinase-like (PK-like) 272 534 IPR011009 -
Apr10g1244 1045 ProSitePatterns Trp-Asp (WD) repeats signature. 796 810 IPR019775 -
Apr10g1244 1045 ProSiteProfiles Trp-Asp (WD) repeats profile. 776 818 IPR001680 GO:0005515
Apr10g1244 1045 Gene3D Transferase(Phosphotransferase) domain 1 269 541 - -
Apr10g1244 1045 PANTHER LIGASE COP1, PUTATIVE-RELATED 1 1045 - -
Apr10g1244 1045 SMART WD40_4 997 1043 IPR001680 GO:0005515
Apr10g1244 1045 SMART WD40_4 812 852 IPR001680 GO:0005515
Apr10g1244 1045 SMART WD40_4 855 894 IPR001680 GO:0005515
Apr10g1244 1045 SMART WD40_4 898 936 IPR001680 GO:0005515
Apr10g1244 1045 SMART WD40_4 715 759 IPR001680 GO:0005515
Apr10g1244 1045 SMART WD40_4 770 809 IPR001680 GO:0005515
Apr10g1244 1045 SMART WD40_4 947 986 IPR001680 GO:0005515
Apr10g1244 1045 SMART serkin_6 194 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1244 1045 ProSiteProfiles Trp-Asp (WD) repeats profile. 905 945 IPR001680 GO:0005515
Apr10g1244 1045 PANTHER PROTEIN SPA1-RELATED 2 1 1045 IPR044630 GO:0009640
Apr10g1244 1045 ProSiteProfiles Protein kinase domain profile. 176 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1244 1045 Pfam WD domain, G-beta repeat 814 852 IPR001680 GO:0005515
Apr10g1244 1045 Pfam WD domain, G-beta repeat 904 936 IPR001680 GO:0005515
Apr10g1244 1045 MobiDBLite consensus disorder prediction 1 58 - -
Apr10g1244 1045 ProSitePatterns Trp-Asp (WD) repeats signature. 923 937 IPR019775 -
Apr10g1244 1045 ProSiteProfiles Trp-Asp (WD) repeats profile. 819 861 IPR001680 GO:0005515
Apr10g1244 1045 PRINTS G protein beta WD-40 repeat signature 796 810 IPR020472 -
Apr10g1244 1045 PRINTS G protein beta WD-40 repeat signature 839 853 IPR020472 -
Apr10g1244 1045 PRINTS G protein beta WD-40 repeat signature 923 937 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1244 Apr-Chr10 24851329 24858146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1244 816 1009 Miscellaneous Gene Families AT5G08390 26.500 2.87e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Apr10g1244 WD40 0.037 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1244 K16240 - gmx:100802144 1580.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1244 10 24851329 24858146 Apr10g1244 10 24851329 24858146 ECH