Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr10g1244 | ATGACAACAGCAAATGGTGGGGCAGGGACTGAGGAGCACAAGAGAAAAACCAATGATCCTTTTCTCAAGTCCCCTGGGCACCAAAATATGCCCAAATCACCTAGATTGTGCACACCTATAAGGAAGGAATGGCCAGAGAGTTTGCCAAATGACAATACAATTGGTAATGAGGATAATGGATTGAATAGATATGTTACTTCCTTAGCTGGATCTGGACCTCCTGGTACTAATTTTTGTTCCACAATTGATTCTGAACACATTGTTGAAGAATTACCTGTTAGGAATTATAAGAATCAGAATATAGATGTAGTTAACCACCCGCATAATTCAAGACAGCCTCTGAGGAATCAATTGGCTATTGAGTCTAAGTATAATAGCTTGAGTAGAGAAATTGTACCCAAGGTTGAATTACAGATACCACTCAAATTAAGCAAAGGACTAAAGGGAATTGATTCCGAAATTTGGGGCCTGAAATCTCTGCCACTGAAAGTGTCTGCAGATATAAGCAATAGGAATAAGACTATCACCTCAAGCAATGCACATCTGAATAGCAGTAAAACGCATAATACTTTGTCTGCATATAATTGTCCTCAATTGGTTGCAGAGCAAACAGTGAAGGGAAAGGGTGTTATTTGCAAAGATTTAGACAAAAACTTTGGTCTTGGAGGAGTGCTTATGAGCCAAGAGGATGAGAAACCTGCTTTTGCAACTAAGCTTCAACATGACACGCTGCTGAGACCAAATGTGGTTGATAATAACCCTTCCTTAAAAGAAACAGCCGTGATGTGCGCAGAATCTTCTAATGATGCACTCAACTTAAGAGAGTGGATTAAGTCTGAAGATCATATAATGAAGAAATCAGTAAGGCTACAAATATTTAAGCAGATCTTGGAAATGGTTGATTTTGCACACTCCCAAGGAAATGTCTTGAAAGATTTGAAACCATCTTGTTTCTCTTTACTGCCTTCAAGTAAAATTAAATATATTGGTTCATATGGCCACCGAGAATTAGATAATGAAGTCATGAAGCGCAATGTGACTTGGAAAAGGCCTCTGGAACAGGATATCGGTGCTTGCCAAAGTTTGAGTACAAAGCAGCAAAAGCTCTGTGAGGAGACAGGATCTTTTAGGCAGCAGCATCACTTCACCTGTATTCATGGCTCCAGGACAATGGTGAATCAAACTGACTCTGACACAAATGGATCCATGGAATCAAGGAACAAAGAAAGTTTGTACCAAAATGATTCTAGTCATCAATGCACTTACACTGATGAAAAGCAGTATATGTCTGTAACCATTCAGTTAGAAGATAAATGGTATTGTAGTCCAGAAGTGCTAAATGGTGGACCTTGCACATTTTCATCAAATATTTATAGCCTTGGAGTTCTTCTTTTTGAGGTAAGCAGATATTTTTTGCTGTGCAACATTGAATCATGGGAGGCACATTCAACTATGATGTTGGATTTGTCTTGTAGAATCTTACCACCAAAATTTCTATCAGAAAACCCAAAGGAAGCTGGTTTTTGTCTTTGGCTTCTGCATCCTGAGCCATCTTCTCGCCCCATCACCAGGATGATTTTAGAATCTGAATTCATATGCGAATCAGAGGAATCAAGTTCTGGAGAAGATGTTGTAGTATCTGATGATGATGAGACTGAAACAGAGCAATTAATACACTTTCTAATTTCACTCAAAGAAGAAAAGAAAAAACAGGCAGCCAAGTTGGAAGAACAGCTAAATTGCTTGAATGAAGATATTAAGGGGGTTGAAAGAAGTTATTCATTTGGAATAGATTCAGTATTTCACATAGCACAAATGAACAATCCTGAATTGAGAGGAAATAGTTTACATTTTCAAGACTCTTCCATCTCAGATATTAATACATCTATTCCACGATCATTTGTTGATGAAGAAAGATTCATGAGTAATATAAATCAATTAGAGAATTCTTACTTTTCGACAAGATTCAAAGTCCTTGCAAAAGAGGCATCAGCTGTTTTAAACAATGATAAAAATGTGGTGGAAAGTAGATGGAGGTTGTCTCATGTAGAGAATGTTAATAAGGAGCCTAGAGGAATTCAGAATTCTGTTGGTTGCCTGGGATCCTTCTTTGAAGGTTTATGGAATTTTGCTCGTTACAGCAAGTTTGAAGAGTGTGGCACATTAAGAAACAGAGATCTTCTTAGTTCTGCTAATGTAATGTGTGCTTTAAGTTTTGATCGGGACGAGGATCACATTGCAGCAGGTGGAGTTTCAAAGAAAATAAAGATTTTCGATCTCAACTCTATTTCAAGTGATTCTATTGATATCCAGTACCCAGTAGTTGAGATGTCAAATAAATCAAAGCTTAGCTGTGTTTGCTGGAACAGTTATATAAAAAATCATCTGGCTTCTACTGATTATGATGGTGTAGTTCAGATGTGGGACGCAGACACTGGTCAGCCATTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTCTGGCAGACCCAAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTGTCAAACTGTGGAATATCAGCGAGAGAAACTCTATGGGAACCATCTGGAACCCTGCCAATATATGCTGTGTTCAGTTCTCTGCTTACTCAACAAATCTTTTATTTTTCGGATCAGCTGATTACAAAGTATATGGTTATGATCTTCGTCACACAAGAATCCCTTGGTGCACATTATCTGGTCATGGTAAAGCTGTTAGCTATGTAAAATTTATAGATGCTGAAACAGTTGTCTCTGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTGAATAAGACCAGCTCTTCGGCGTTGTCATCTGATGCTTGTGTCTTAACCTTTAAAGGTCATAGTAATGAAAAGAATTTCGTGGGATTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATCTCTGCCAGTGCCGATCGCTACTCATAAATTTGAGTCAATTGATTCCATTTATGGTCATCCAAATAGTGGTGATAATAGGGGACAGTTTGTTTCAAGCGTTTGTTGGAGAAAGAAGTCTAACATGCTTGTTGCTGCCAACTCAGTTGGAATAGTAAAACTATTGCAGATGGTCTGA | 3138 | 0.383 | MTTANGGAGTEEHKRKTNDPFLKSPGHQNMPKSPRLCTPIRKEWPESLPNDNTIGNEDNGLNRYVTSLAGSGPPGTNFCSTIDSEHIVEELPVRNYKNQNIDVVNHPHNSRQPLRNQLAIESKYNSLSREIVPKVELQIPLKLSKGLKGIDSEIWGLKSLPLKVSADISNRNKTITSSNAHLNSSKTHNTLSAYNCPQLVAEQTVKGKGVICKDLDKNFGLGGVLMSQEDEKPAFATKLQHDTLLRPNVVDNNPSLKETAVMCAESSNDALNLREWIKSEDHIMKKSVRLQIFKQILEMVDFAHSQGNVLKDLKPSCFSLLPSSKIKYIGSYGHRELDNEVMKRNVTWKRPLEQDIGACQSLSTKQQKLCEETGSFRQQHHFTCIHGSRTMVNQTDSDTNGSMESRNKESLYQNDSSHQCTYTDEKQYMSVTIQLEDKWYCSPEVLNGGPCTFSSNIYSLGVLLFEVSRYFLLCNIESWEAHSTMMLDLSCRILPPKFLSENPKEAGFCLWLLHPEPSSRPITRMILESEFICESEESSSGEDVVVSDDDETETEQLIHFLISLKEEKKKQAAKLEEQLNCLNEDIKGVERSYSFGIDSVFHIAQMNNPELRGNSLHFQDSSISDINTSIPRSFVDEERFMSNINQLENSYFSTRFKVLAKEASAVLNNDKNVVESRWRLSHVENVNKEPRGIQNSVGCLGSFFEGLWNFARYSKFEECGTLRNRDLLSSANVMCALSFDRDEDHIAAGGVSKKIKIFDLNSISSDSIDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDADTGQPLSQYMEHQKRAWSVHFSLADPKMFASGSDDCSVKLWNISERNSMGTIWNPANICCVQFSAYSTNLLFFGSADYKVYGYDLRHTRIPWCTLSGHGKAVSYVKFIDAETVVSASTDNSLKLWDLNKTSSSALSSDACVLTFKGHSNEKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPIATHKFESIDSIYGHPNSGDNRGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV* | 1046 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr10g1244 | 1045 | SUPERFAMILY | WD40 repeat-like | 733 | 1042 | IPR036322 | GO:0005515 | |
Apr10g1244 | 1045 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 905 | 938 | - | - | |
Apr10g1244 | 1045 | Coils | Coil | 558 | 592 | - | - | |
Apr10g1244 | 1045 | Gene3D | - | 704 | 1045 | IPR015943 | GO:0005515 | |
Apr10g1244 | 1045 | SUPERFAMILY | Protein kinase-like (PK-like) | 272 | 534 | IPR011009 | - | |
Apr10g1244 | 1045 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 796 | 810 | IPR019775 | - | |
Apr10g1244 | 1045 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 776 | 818 | IPR001680 | GO:0005515 | |
Apr10g1244 | 1045 | Gene3D | Transferase(Phosphotransferase) domain 1 | 269 | 541 | - | - | |
Apr10g1244 | 1045 | PANTHER | LIGASE COP1, PUTATIVE-RELATED | 1 | 1045 | - | - | |
Apr10g1244 | 1045 | SMART | WD40_4 | 997 | 1043 | IPR001680 | GO:0005515 | |
Apr10g1244 | 1045 | SMART | WD40_4 | 812 | 852 | IPR001680 | GO:0005515 | |
Apr10g1244 | 1045 | SMART | WD40_4 | 855 | 894 | IPR001680 | GO:0005515 | |
Apr10g1244 | 1045 | SMART | WD40_4 | 898 | 936 | IPR001680 | GO:0005515 | |
Apr10g1244 | 1045 | SMART | WD40_4 | 715 | 759 | IPR001680 | GO:0005515 | |
Apr10g1244 | 1045 | SMART | WD40_4 | 770 | 809 | IPR001680 | GO:0005515 | |
Apr10g1244 | 1045 | SMART | WD40_4 | 947 | 986 | IPR001680 | GO:0005515 | |
Apr10g1244 | 1045 | SMART | serkin_6 | 194 | 532 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Apr10g1244 | 1045 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 905 | 945 | IPR001680 | GO:0005515 | |
Apr10g1244 | 1045 | PANTHER | PROTEIN SPA1-RELATED 2 | 1 | 1045 | IPR044630 | GO:0009640 | |
Apr10g1244 | 1045 | ProSiteProfiles | Protein kinase domain profile. | 176 | 532 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Apr10g1244 | 1045 | Pfam | WD domain, G-beta repeat | 814 | 852 | IPR001680 | GO:0005515 | |
Apr10g1244 | 1045 | Pfam | WD domain, G-beta repeat | 904 | 936 | IPR001680 | GO:0005515 | |
Apr10g1244 | 1045 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Apr10g1244 | 1045 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 923 | 937 | IPR019775 | - | |
Apr10g1244 | 1045 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 819 | 861 | IPR001680 | GO:0005515 | |
Apr10g1244 | 1045 | PRINTS | G protein beta WD-40 repeat signature | 796 | 810 | IPR020472 | - | |
Apr10g1244 | 1045 | PRINTS | G protein beta WD-40 repeat signature | 839 | 853 | IPR020472 | - | |
Apr10g1244 | 1045 | PRINTS | G protein beta WD-40 repeat signature | 923 | 937 | IPR020472 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr10g1244 | Apr-Chr10 | 24851329 | 24858146 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr10g1244 | 816 | 1009 | Miscellaneous Gene Families | AT5G08390 | 26.500 | 2.87e-10 | 62.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | PEK_PEK | Apr10g1244 | WD40 | 0.037 | CL0186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr10g1244 | K16240 | - | gmx:100802144 | 1580.46 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Apr10g1244 | 10 | 24851329 | 24858146 | Apr10g1244 | 10 | 24851329 | 24858146 | ECH |