Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1234 ATGGTAGATAACATGAAGTGTGAACAAGTTGGTCTCATTGATGAGCTAATGCAAGGGAAGGAGCTAGCAAAGCAGCTCTGTGATCATTTGGTCTCATCATCATTACCATCATCACCATCATCATCATCAACAACAACATCACCACCACCATCATCCCATGAAACAAATGAAGTCCTAATTGAGAAAATACTTATCTCCTATGAAAAAGCACTTGCCATGCTGAATTGGAAGACTACTGAGGGAGAGAGAAAGACCAAGAATGGTAGCATGATGGATTCTCATTGTTCTTTCACAAATGGTAGCCCCAGAAGTGAGGTTCAAAACCTTGAGGTTAAGCACAAAGATGTCTTCAAGAAAAGAAAGACCTTGCCTAGGTCGACAGATCAAGTGAAGGTGTGTTCAGGAACACCCCATGATGGGTCTCTGGATGATGGCTATAGCTGGAGAAAATATGGGCAGAAAGATATTCTTGGAGCTAAGTTTCCAAGAGGGTATTTCAGATGCACATATAGAAATGTACAAGGGTGTCTGGCCACTAAGCAAGTGCAAAAGTCAGATGAAGACCCAATGATATATGAGATAACCTATAAAGGAAGACACACATGCACCCAAGCAAGTCACTTAAACAAGGCATTCCCGTCGAAAGCAAAGACGGGTTTGGGAGAAAACAAACACCAAACCCATCAAAAGAATCAACCACAACAAGAGAAAATAGAACAACCCAGTGAGACAATTTTCTCTTTTGGATCAAGTCTTGAAGTTAAAATGGAGGACTTGGAAAACAAGGAGGACATATTCCCATCATTTTGCTTTGCTTCTCCATCAATAGGATCTGAAAATGAGGACAAAAACATATTCTCAGATTCCATGATTGAAAACAATTTCATGGAAAGCTTTTCTCCTGCATTCATATCACCAACAACTTCAGAATCGAACATTTTCTGTTTGTCACCATGCTACTTGGGCAGCACTGGACTAGGCCAAAGTGTGCAAACCTCAGAGTCTGATCTCACAGACATAGTTTCAGCACCAACTTCAATCACCAATTCCCTTATAATGGATTTTGATTTCATCCTTGATAAGTTCGATTTCGACACATTTTTCCCCTTGAACACCCCAGAACTTTGCTCTTCATAA 1137 0.4046 MVDNMKCEQVGLIDELMQGKELAKQLCDHLVSSSLPSSPSSSSTTTSPPPSSHETNEVLIEKILISYEKALAMLNWKTTEGERKTKNGSMMDSHCSFTNGSPRSEVQNLEVKHKDVFKKRKTLPRSTDQVKVCSGTPHDGSLDDGYSWRKYGQKDILGAKFPRGYFRCTYRNVQGCLATKQVQKSDEDPMIYEITYKGRHTCTQASHLNKAFPSKAKTGLGENKHQTHQKNQPQQEKIEQPSETIFSFGSSLEVKMEDLENKEDIFPSFCFASPSIGSENEDKNIFSDSMIENNFMESFSPAFISPTTSESNIFCLSPCYLGSTGLGQSVQTSESDLTDIVSAPTSITNSLIMDFDFILDKFDFDTFFPLNTPELCSS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1234 378 MobiDBLite consensus disorder prediction 31 54 - -
Apr10g1234 378 Pfam WRKY DNA -binding domain 143 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g1234 378 MobiDBLite consensus disorder prediction 31 55 - -
Apr10g1234 378 SUPERFAMILY WRKY DNA-binding domain 141 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr10g1234 378 MobiDBLite consensus disorder prediction 219 241 - -
Apr10g1234 378 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 1 374 - -
Apr10g1234 378 Gene3D WRKY domain 127 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr10g1234 378 SMART WRKY_cls 142 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr10g1234 378 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 374 IPR044810 GO:0003700
Apr10g1234 378 ProSiteProfiles WRKY domain profile. 142 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1234 Apr-Chr10 24728958 24731797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1234 5 302 WRKY Transcription Factor Family AT2G46400 34.754 8.79e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr10g1234 WRKY 3.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1234 - - aprc:113849885 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1234 10 24728958 24731797 Apr1g0705 1 8417409 8419187 ECH
Apr10g1234 10 24728958 24731797 Apr10g1234 10 24728958 24731797 ECH
Apr10g1234 10 24728958 24731797 Apr4g0912 4 7362135 7364807 ECH
Apr7g0532 7 11786912 11788258 Apr10g1234 10 24728958 24731797 ECH
Apr2g1266 2 18886565 18888431 Apr10g1234 10 24728958 24731797 ECH
Apr4g0912 4 7362135 7364807 Apr10g1234 10 24728958 24731797 PCT