Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1227 ATGGTTGAACACTCAACACTGAAAACTGAAGAAGCTCACACTCTTTATCTCTCTGCATTTGCTATGCCTCCAAAGCTGTTATCAGTATCACACCTTCGTTTTCTCCTCCCAATGAAGTCCCAAACTCTACCCACGCTCTCTAGAACCTTCTTACTCCCTTTCAAGTTCAACTTCACCCACCTCGCCCTTCGAAACGCATCGTTTAAGCCTCGCCCCTTCTCCACTCGTGCCCACCGGAATAGCAGAGAAAACGTTAGGGTTTCCAAGAGTCTTGTCGACGACGAGGCCGAACTCAGCGATTGGGTCGACGACTTGCGAACCGGCCGCTCCGACCGTTTCTCCGATTCCACCAGAACCTCCCGTTTCAGCCGCCGGTTGGGTCGCGAGGATGACGATGATGATGAGGAAGAAGTAGAAGATAAATCACGGAGGAATAATAGGGCTTCTATGTTGGGGAAGAGAAGGGGTGAGGATTTGAGGAGGGGAAGACACAATGCTGATGCGAGGAGAAGGTTTCAATTGAAGAGTGATGATGATGATGATGATGTAGCAGGAAGAAAGTTGAAGGTTGGTGGCATTGGAGAGTTTCTTAGTGAAGAAGATGAAGATGAAGAGAGTGAGGATGAGGAGGTATTGAACAAAAGTAGAAGTGCTTTGTTTGGTCAACAAAAGAGGACCACTGAGTCAACTCCAAGACCTTCTTCACCTGGAGGATCTGATTCTTATTTGAGTGACACCAGGTTTGACCAATGTTCAATCTCCCCACTTTCATTAAAAGGAGTCAAGGATGCTGGGTATGAGAAAATGACTGTTGTGCAGGAGGCAACGCTTCCATTAATTCTCAAAGGTAAGGACATCCTTGCCAAGGCTAAAACAGGCACTGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAAGTCTGCTCCAAATGATTGTGATCAAAGGCGGCCACCAATTTTTGTTCTGGTTATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAAGCCACCAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGGACAAGACTTGCTTTAGAACAGAAACGTATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATATTGAGAATACTGCTGGTTTTGCTTCTAGGATGATGGGAGTAAAGGTCCTGGTGCTTGACGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGATATTGAGAAGATAATTGCTGCAGTCCCCAAACAGCGACAAACACTTATGTTTTCTGCCACCATTCCAGAAGAGGTGCGTCAAGTCTGCCATATTGCTTTGAGACGGGATCATGAATTTATCAATACAGTTCAAGAGGGTACTGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAGTAGCCCCGTTAGACAATCATTTCTCTTTACTCTATGTTCTTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGTTTACAAGACTTGTTTCTGAACTTCTTGGTGAGTTGAACTTGAATGTAAGAGAAATCCATTCAAAAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAGTTTCGGAAGTCAAAGGGTCTCATCCTGGTAACTTCAGATGTGTCTGCCCGTGGTGTCGATTATCCAGACGTCACTCTTGTTGTACAGGTTGGTTTGCCAGCGGGCAGAGAACAGTATATACATCGACTAGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGGAAGACTTCTTTTTATCTACCATAAAAGATTTACCTGTTGAGAAAGCTGCAGTACCTTCAGTTGATCCTGACACTAAGAAAAAGGTGGAAAGAGCTCTATCCCATGTAGAGATGAAGAATAAAGCAACAGCATATCAGGCATGGCTTGGTTACTACAATTCCAACAAGAAAGTGGGGGGAGACAAGTATAGACTAGTGGAGCTTGCAAATGAGTTCAGTCGATGCATGGGGCTTGATAACCCTCCAGCCATCTCTCAGTCAGTCCTTGGCAAGATGGGCCTTAGGAATATCCCTGGTTTACGTGCCAAATAG 2145 0.4536 MVEHSTLKTEEAHTLYLSAFAMPPKLLSVSHLRFLLPMKSQTLPTLSRTFLLPFKFNFTHLALRNASFKPRPFSTRAHRNSRENVRVSKSLVDDEAELSDWVDDLRTGRSDRFSDSTRTSRFSRRLGREDDDDDEEEVEDKSRRNNRASMLGKRRGEDLRRGRHNADARRRFQLKSDDDDDDVAGRKLKVGGIGEFLSEEDEDEESEDEEVLNKSRSALFGQQKRTTESTPRPSSPGGSDSYLSDTRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPLILKGKDILAKAKTGTGKTVAFLLPSIEVVAKSAPNDCDQRRPPIFVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFASRMMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATIPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQMHLVAPLDNHFSLLYVLLKEHIADDVDYKVLVFCTTAMFTRLVSELLGELNLNVREIHSKKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPAGREQYIHRLGRTGRRGKEGQGILLLAPWEDFFLSTIKDLPVEKAAVPSVDPDTKKKVERALSHVEMKNKATAYQAWLGYYNSNKKVGGDKYRLVELANEFSRCMGLDNPPAISQSVLGKMGLRNIPGLRAK* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1227 714 MobiDBLite consensus disorder prediction 139 196 - -
Apr10g1227 714 Pfam Helicase conserved C-terminal domain 494 599 IPR001650 -
Apr10g1227 714 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 277 460 IPR014001 -
Apr10g1227 714 SMART ultradead3 265 478 IPR014001 -
Apr10g1227 714 MobiDBLite consensus disorder prediction 112 244 - -
Apr10g1227 714 CDD DEADc_MSS116 253 462 - -
Apr10g1227 714 Gene3D - 196 461 IPR027417 -
Apr10g1227 714 Pfam DEAD/DEAH box helicase 271 448 IPR011545 GO:0003676|GO:0005524
Apr10g1227 714 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 246 274 IPR014014 GO:0003724
Apr10g1227 714 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 494 645 IPR001650 -
Apr10g1227 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 616 IPR027417 -
Apr10g1227 714 MobiDBLite consensus disorder prediction 112 129 - -
Apr10g1227 714 PANTHER RNA HELICASE 53 163 - -
Apr10g1227 714 PANTHER RNA HELICASE 231 712 - -
Apr10g1227 714 CDD SF2_C_DEAD 475 608 - -
Apr10g1227 714 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 231 712 - -
Apr10g1227 714 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 53 163 - -
Apr10g1227 714 SMART helicmild6 518 599 IPR001650 -
Apr10g1227 714 Gene3D - 469 702 IPR027417 -
Apr10g1227 714 MobiDBLite consensus disorder prediction 216 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1227 Apr-Chr10 24671991 24677094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1227 246 627 Eukaryotic Initiation Factors Gene Family AT3G19760 27.889 2.03e-47 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1227 - - gmx:100795739 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1227 10 24671991 24677094 Apr10g1227 10 24671991 24677094 ECH