Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1224 ATGACTTCAAAGGGACAGAAATTTGTGAGGTTTGTGAATTGGAAGTCACTGTCATCTTCAAGTATTGAGCACAATGATTCTACCAGTGACGGATTTCACAAGAGAGAAGTTAAATCAAGTGTATGTCCTGTCAGTGATGGATCAATAAAAAAAATTTCTTGTAGGGGCAATGTTTTTGATCCACAGGGGCCAATACTTCAGAAATGGAACAAAATATTTGTAATCACGTGTGTGATGGCAATCTCTGTGGACCCTCTTTTCTTTTACATCCCAGTGATAGATGACAAGGAAAAGTGCCTTAATTTGGATAAAAAATTGAAGATTATTGCTAGTGTTCTGCGCACATTCTTTGATCTTTTCTACATTCTTCATATCATCTCTCAGTTTCGAACTGGGTTCATTGCCCCTCCTTCTCGTGTATTTGGAAGGGGTGAGCTGGTTGATGATCCTTGTGCCATAATGATGAGATACTTAAGTTCTTACTTCATGATTGACATTTTATCAATTATTCCACTTCCTCAGGTGGTCATTTTAATCCCAAAAGGCTCAGTTCCATATATGATAAAGGATTTGTTGAAGTATGCGGTAATAGCCCAGTATGTGCCAAGACTTCTGCGGATCTACCCTTTATTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTACAATCTTTTTCTCTACATGCTAGCAAGTCATGTTGTTGGAGCTTTCTGGTATCTGTTTTCGTTAGAATCAAGGTTGCGGTGCTGGCGCCGGCAGTTGAACCATACTATCTTTCCTCATGAATCCTTTCTTAGCTGTGGAACTAAGAATTCTACTGTTCTATCAATTCTCAATGCTTCTTGCCCTTACGATGATCCTGATAAAATTGGAGACTTGACAGCTTTCAATTTTGGAATATTTTTAGACGCTCTAAAGTCTCGTGTGGTAGAATCTACTACAGATTTTCATCACAAGTTCTTCTTCTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCTGTTGGGCAAAACCTCCAAACAAGTACTTATCTTGGGGAGATTTTTTTTGCTATTTTTATAGCTACTTTTGGGTTGGTTCTATTTGCGTCACTTATTTCAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGACTCAAAAGGCGGGATGCAGAACAGTGGATGTCACACCGCATGCTACCTGACTTGCTTAAAGAAAGAATTAGACGATATGAACAATACAAATGGCAAGTAAATAGAGGTGTTGAGGAAGAGAAATTAATTCACAACCTCCCTAAAGATCTCAGAAGAGACATCAAGCATCATCTTTGCTTAGGTCTACTAAAAAAAGTGCCAATGTTTGAGAACATGGATAAACAGCTACTTGATGCATTGTGTGATAGACTGAGGCCAGTCCTTTATACAGAGAAAAGTTACGTAGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTTATCATGCGTGGAAAACTTGCTACTGCCACAACAAATGGCGGAAGAACTGGTTTCTTCAACTCATCAGTGCTCAAAGCTGGTGATTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGATCCCAACTCCTCCCCAACACTACCCATTTCAACTAGAACAGTAGAAACTATATCTGAGGTTGAAGCCTTTGCTCTCACGCCTGAGGACTTGAAGTTTGTTGCTTCCCAATTTCGACGCCTTATAAACAACAACCAACTCCAACACAGTTTCAGGTTCTATTCCTTGCAATGGAGGACATGGGCTGCATGTTTCATACAAGCAGCTTGGCGTAGACACCGGAAAAGGAAGACTGAGAGGTCATTACGGGAAGCAGAACAAAGGCTACATGCTTTTGAAAATGAAGAAGGGTCCTCACCAAGCTTTGCTGCCACATTTTATGCATCAAGGTTTGCATCCAATGCATTGCAGCATTTGCGAAGTGGTAAACGCAACAGAATCCCACAGACTCAGAGATTACTACCCCTGATGCCTCAGAAGCCAGCTGAGCCAGATTTCACTACTCAAAAGGACTAA 2070 0.4077 MTSKGQKFVRFVNWKSLSSSSIEHNDSTSDGFHKREVKSSVCPVSDGSIKKISCRGNVFDPQGPILQKWNKIFVITCVMAISVDPLFFYIPVIDDKEKCLNLDKKLKIIASVLRTFFDLFYILHIISQFRTGFIAPPSRVFGRGELVDDPCAIMMRYLSSYFMIDILSIIPLPQVVILIPKGSVPYMIKDLLKYAVIAQYVPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSLESRLRCWRRQLNHTIFPHESFLSCGTKNSTVLSILNASCPYDDPDKIGDLTAFNFGIFLDALKSRVVESTTDFHHKFFFCFWWGLRSVSSVGQNLQTSTYLGEIFFAIFIATFGLVLFASLISNMQKYLQSTTVRVEEMRLKRRDAEQWMSHRMLPDLLKERIRRYEQYKWQVNRGVEEEKLIHNLPKDLRRDIKHHLCLGLLKKVPMFENMDKQLLDALCDRLRPVLYTEKSYVVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNSSPTLPISTRTVETISEVEAFALTPEDLKFVASQFRRLINNNQLQHSFRFYSLQWRTWAACFIQAAWRRHRKRKTERSLREAEQRLHAFENEEGSSPSFAATFYASRFASNALQHLRSGKRNRIPQTQRLLPLMPQKPAEPDFTTQKD* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1224 689 Gene3D Jelly Rolls 458 578 IPR014710 -
Apr10g1224 689 SUPERFAMILY cAMP-binding domain-like 389 578 IPR018490 -
Apr10g1224 689 SMART cnmp_10 460 591 IPR000595 -
Apr10g1224 689 Coils Coil 613 633 - -
Apr10g1224 689 MobiDBLite consensus disorder prediction 659 689 - -
Apr10g1224 689 CDD CAP_ED 460 592 IPR000595 -
Apr10g1224 689 Pfam Ion transport protein 69 388 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Apr10g1224 689 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 687 - -
Apr10g1224 689 ProSiteProfiles cAMP/cGMP binding motif profile. 460 543 IPR000595 -
Apr10g1224 689 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 687 - -
Apr10g1224 689 Gene3D - 71 384 - -
Apr10g1224 689 ProSiteProfiles IQ motif profile. 597 626 IPR000048 GO:0005515
Apr10g1224 689 Pfam Cyclic nucleotide-binding domain 480 570 IPR000595 -
Apr10g1224 689 Gene3D Helix hairpin bin 387 451 - -
Apr10g1224 689 SUPERFAMILY Voltage-gated potassium channels 60 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1224 Apr-Chr10 24627541 24632661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1224 1 686 Ion Channels AT5G53130 61.442 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1224 K05391 - gmx:100795201 1115.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1224 10 24627541 24632661 Apr10g1224 10 24627541 24632661 ECH