Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1223 ATGGTTATCTTGAAGATCCTTTTTTCCTTCTTCATCTTTCCTGTCATATATGCCTCAAATGATTGCCAATTTTCTGTATGTGGTAACGATAATATCCTTATTCGTTTCCCCTTTCAAATCGAAGGTGAGCAACATCCTTATTGTGGCTATCCTGGTTTCAACTTAATTTGTACGAATGACAGCAAAACAGTTCTAAAACTTCCTTACTCTGGAGAATTCTATGTACGCAACATAACCTATCTCACACAACAGATACAAGTTTACGACCCTGATGATTGCCTTCCCAAACGTCTTCTGAGCCTCAAATTTTCAGGTTCACCCTTCACTGCCACTTTCAGTCGTAACTACACCTTCTTAAGCTGCCCATCTCGGAACGCAAGATCACAATTCATTCCCATTGAATGCCTTAGTAATTCCACAAATTTTGTGTCAGCTATTCCTACTGTGAACTTGGGCACTTCATTGCCTGAGTCTTGCCATGTTATTACAACGCTTTCAGTTCCAGTTGCAAGGCCAGCGCAGTATGAGGGAAATCTCGTAGATGACCTTAGTGAAGATCTTCAATTGACATGGGATAAACCCGACTGCCAATATTGCGAATCACAGGAGCTAATGTGTGAATTTGCGAGCAGTAACAGTAATCAAGTTCTCTGTTTCTCTCATTATCAAACAGGTAATTCACAGCATGGACTTGTAGTTTTTAGAATCATCGCATTATGCCTTGCTGGACCCGCTGCCGTCTTTGCTATAGTGATGGCAGGTTGCGTGTGCTACAAAGACAGAATAGGGAATATTCACAACAATGCTGCATCTGCACGAGGTGCAATATCACCTACACCACTACCAGACATTGTGAGTAGGGGTTTGGACGAGTGTACAATAGAGTCATATGAGAAGGTTATACTTGGAGAGAGTCGACGGTTGCCTGGACCCAACAATGAATGTTGTTGGATATGCTTGGCAGAATACAACACCAAAGACACAATAAGATGCATTCCTGAATGCAAACATTGCTTCCATTCTCGCTGCATTGATGAGTGGCTTCGCATCAACAACACATGCCCAGTTTGCCGTAACTCTCCTTCCCCTTCTCCCCTTCAAATTCCCGTGCAATCGAGTATACTCCTAGCACTAGCACTGATGGCTAGAAGTCCCCACCCCGTTTTGCCTGATTTGAATGAATCCACTGTGCCTGATCAAAATGAGCGCAGTCTTCCATTTCGGCTCATTTTGCCTGATCTAAATGAGCCCAGGGTTCCATTCGAGCGCGCTTGGCCTGATCTAAATGACCCCGTTCTTTCTTTTCCATATAAACCCACTTCGCCTGTTCGTAAGGAACCTGCTTTGTCTTTGCCTTATGTGAGTTTACTCCCTCCTCTCGAGGGTATTAATGACGAGAATGAACAAGAATCTGAAGAGAATGAGGAGAAGGAGAAGGTGAAGGGGAAGGTAGCTCCAAACACTCAACATGGAAGAAGATGTGTTATTCAGCAAAGAAGGCTGTTAAAAAGTTCGTCAAAGACACATGGAACTAATGTGTGA 1542 0.4332 MVILKILFSFFIFPVIYASNDCQFSVCGNDNILIRFPFQIEGEQHPYCGYPGFNLICTNDSKTVLKLPYSGEFYVRNITYLTQQIQVYDPDDCLPKRLLSLKFSGSPFTATFSRNYTFLSCPSRNARSQFIPIECLSNSTNFVSAIPTVNLGTSLPESCHVITTLSVPVARPAQYEGNLVDDLSEDLQLTWDKPDCQYCESQELMCEFASSNSNQVLCFSHYQTGNSQHGLVVFRIIALCLAGPAAVFAIVMAGCVCYKDRIGNIHNNAASARGAISPTPLPDIVSRGLDECTIESYEKVILGESRRLPGPNNECCWICLAEYNTKDTIRCIPECKHCFHSRCIDEWLRINNTCPVCRNSPSPSPLQIPVQSSILLALALMARSPHPVLPDLNESTVPDQNERSLPFRLILPDLNEPRVPFERAWPDLNDPVLSFPYKPTSPVRKEPALSLPYVSLLPPLEGINDENEQESEENEEKEKVKGKVAPNTQHGRRCVIQQRRLLKSSSKTHGTNV* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1223 513 Coils Coil 460 483 - -
Apr10g1223 513 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 3 365 - -
Apr10g1223 513 SUPERFAMILY RING/U-box 309 364 - -
Apr10g1223 513 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Apr10g1223 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 363 IPR013083 -
Apr10g1223 513 MobiDBLite consensus disorder prediction 460 513 - -
Apr10g1223 513 ProSiteProfiles Zinc finger RING-type profile. 316 358 IPR001841 -
Apr10g1223 513 MobiDBLite consensus disorder prediction 491 513 - -
Apr10g1223 513 Pfam Ring finger domain 316 358 IPR001841 -
Apr10g1223 513 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 365 - -
Apr10g1223 513 Pfam Wall-associated receptor kinase C-terminal 154 220 IPR032872 -
Apr10g1223 513 SMART ring_2 316 357 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1223 Apr-Chr10 24596890 24605419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1223 27 363 C3H Transcription Factor Family AT2G25410 45.029 7.94e-96 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1223 - - aprc:113851081 1022.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1223 10 24596890 24605419 Apr10g1223 10 24596890 24605419 ECH
Apr4g0921 4 7457419 7459382 Apr10g1223 10 24596890 24605419 PCT