Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1221 ATGATAATTAAGCGAACGATGAAAATTGAAATGCCGAACCTTAAACGGTGTAACATGGAGGAGCCTGATTCCGAGGATGGGTGTTCGGCGATTCAGAAGAAGCGTAGGGTGAATGGGTTTTACTCTCTGGGCATGCCAGGTGATGCTGAAGATTTCAGCAGCGGTTCTGGTTCTTGGAGCAGTGAAGGATCGTATTGGGGTGGTGGCGAGGTTCAGTCCAATTCAAATTCTGTTCTGTTTAACCGGAAAACAGCGAAATACAGGGGCTCTGAAGCTTCTCGGCCTCCTCTGTTGCGGTCTTCGCGTGGCCGGGTTCAGACACTTCCCTCAAGGTTCAATGACTCGGTTCTTGATACGTGGAAGAATCGAGGAACCAAAGAAGAGGATGGAGACTCCAGCTTTGAAGATGATAAGAGTTTTTTGGAAGATGAAAGGGGTGGCATTGGTGCAAAGGGGATTGTGAAACTGGAGAAGAGTGATAGTGTGTGTTATCCGTATTCTGAAGTGAAGGTGGTAGCGGATTTGGGGGCGTTAGGTTTCAACGGTTTTGATAAAAGGGAGCATGCTGATTCGTGTAGTGTTGGAAGAAGGAATGTTAAGGCTGAGAGTAATACGTCTGGTCTTAGTTTTGAGGGTGTGGATCAAAAGCCTAATGGGAATGCTGAGAAGAGGAAGGAGGTTTACAAGCCGGAGGATTTTGCTTTGGGTGATCTAGTATGGGCTAAATGTGGGAAGAGGTATCCTGCATGGCCGGCTGTGGTGATTGATCCTATCTTGGAGGCTCCTAAATCTGTCCTCAGCTGCTGTGTCCCTGGTGCGCTTTGCGTGATGTTTTTCGGTTATTCGAAAAATGGAACACAGAGGGATTATGCGTGGGTGAAGCAGGGAATGCTATACCCCTTCTTGGAATTCATGGACAGATTCAAGGGGCAGACCCGGTTGTACAAGAGCAAACCAAGTGACTTTCACATGGCACTGGAGGAGGCAATGTTGGCAGAAGATGGTATCATGGAATCACAGTTGAGAGGAGAGGAAGTAACAAATGTGAAAGATGATCCTGATGAACTTATAGAGGCCACCTGTTCATATATTGATGAGGAATATTACTGCCAGGATCAGGATGCAAGATATTGTGCTGGCTGTGGTCTGATGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAATTGTGCACCTCAATTTTATTGCAAACATTGTGCTAAGTTGCGAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGACGGTGGGAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCCGAGTGTGATAAAATTTCCAGCGAGCTTTTCAAGGATTTGGAAAATACAGATTATTACTGTCCAGATTGCAAGGGAAAAATCAATTGTAAATTACCAGCATCACAAACGTACAAGACAAAAATCAAATCAATAGAGAATAGCCAGAAATCTCTGATACCTGAGAAAGTAATGGTGGTGTGCAATGGGATGGAGGGAATTTACATCCCAAAGCTTCACCTGGTCATGTGCAAGTGTCTCACTTGTGGTTCAAGGAAGCAGACACTGAGTGAATGGGAAAGACATACAGGTTGCAGAGCCAAAAAATGGAAACATAGTGTGAAAGTAAAAGGCACAATGCTACCGCTAGAAAAATGGATGACAGATCACATTCCTCAAGAAGGAATACCCCAGCAGTTAGATCAGCAGCAGGTGCTTGCCTTTTTGCAAGAGAAATATGAGCCAGTTTATGCAAAATGGACCACAGAAAGATGTGCCGTTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATCTGTAACAGATGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGCATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTGGAGAGAGAGTGTTGCCTCTGTCCAGTAAAAGGCGGTGCTCTAAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTAACTTGTGCTTGGTTTCGACCTCAAGTTGCTTTCCAAAACCATGAGGCCATGGAACCTGCCATGGGAATCCTTAAAATTCCTCCTAATTCCTTTGTTAAGACTTGTGTGATCTGTAAACAGAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGTGCATCAAGGGCAGGATATACAATGGAATTGCATTCCATGGAGAAGAATGGGACTCAAATAACAAAGAAGCTAATATACTGTGCAGTTCACAGAGTCCCAAGTCCAGATTCAGTACTGGTCATACACACACCCATGGGGGTTTTCTCTCCCCGAACTTCTCTTCAAAGTCACAAGGGATGCTTCAGGGGATCAAGGCTAGTTTCATCAAAAAATGTAGAGCTTAACGAATCTTCAACCACTGAAAATGACAAAGTTGAGCCGCTGTCTGCTGCCAGATGTCGTGTGTACCGAAGGTCTCCTAGTAAGAGGGCTGATCTGCCTGTAATTCACTTGCTGAGGGGACCTAGCATTCATTCTTTAGGTGCAATAACTCAGCTGAACCACTACAAGGATGCTGAAGAATCTAAAGTATTCACTTCTTTCAAGGAACGTCTTCACCATTTACAGAAAATGGAAAAACTTAGAGTTTGCTTTGGAAAATCGGGTATTCATGGATGGGGTCTCTTTGCTCGTAGAGATATACATGAAGGAGAGATGGTTGTTGAATATCGTGGTGTGCAGGTAAGGCGCAGTGTTGCTGATCTGAGGGAAGCCAAGTACCGATCAGAAGGCAAAGATTGCTACCTGTTCAAGATAAGTGAAGAAGTGGTAATTGATGCAACGCACAAGGGCAATATAGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGAGTTTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACCAATGTTTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTGAAAGTTCCCTGCCTATGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAG 3099 0.4389 MIIKRTMKIEMPNLKRCNMEEPDSEDGCSAIQKKRRVNGFYSLGMPGDAEDFSSGSGSWSSEGSYWGGGEVQSNSNSVLFNRKTAKYRGSEASRPPLLRSSRGRVQTLPSRFNDSVLDTWKNRGTKEEDGDSSFEDDKSFLEDERGGIGAKGIVKLEKSDSVCYPYSEVKVVADLGALGFNGFDKREHADSCSVGRRNVKAESNTSGLSFEGVDQKPNGNAEKRKEVYKPEDFALGDLVWAKCGKRYPAWPAVVIDPILEAPKSVLSCCVPGALCVMFFGYSKNGTQRDYAWVKQGMLYPFLEFMDRFKGQTRLYKSKPSDFHMALEEAMLAEDGIMESQLRGEEVTNVKDDPDELIEATCSYIDEEYYCQDQDARYCAGCGLMLPCKTMKKIKDSNCAPQFYCKHCAKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSELFKDLENTDYYCPDCKGKINCKLPASQTYKTKIKSIENSQKSLIPEKVMVVCNGMEGIYIPKLHLVMCKCLTCGSRKQTLSEWERHTGCRAKKWKHSVKVKGTMLPLEKWMTDHIPQEGIPQQLDQQQVLAFLQEKYEPVYAKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKHVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPQVAFQNHEAMEPAMGILKIPPNSFVKTCVICKQSHGSCTSCCKCATYFHVMCASRAGYTMELHSMEKNGTQITKKLIYCAVHRVPSPDSVLVIHTPMGVFSPRTSLQSHKGCFRGSRLVSSKNVELNESSTTENDKVEPLSAARCRVYRRSPSKRADLPVIHLLRGPSIHSLGAITQLNHYKDAEESKVFTSFKERLHHLQKMEKLRVCFGKSGIHGWGLFARRDIHEGEMVVEYRGVQVRRSVADLREAKYRSEGKDCYLFKISEEVVIDATHKGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRKFMN* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1221 1032 Pfam PHD-zinc-finger like domain 654 766 - -
Apr10g1221 1032 Pfam PWWP domain 236 332 IPR000313 -
Apr10g1221 1032 CDD SET_SETD1-like 879 1028 - -
Apr10g1221 1032 Gene3D SET domain 866 1032 IPR046341 -
Apr10g1221 1032 ProSiteProfiles Post-SET domain profile. 1016 1032 IPR003616 -
Apr10g1221 1032 MobiDBLite consensus disorder prediction 53 72 - -
Apr10g1221 1032 ProSiteProfiles PWWP domain profile. 235 304 IPR000313 -
Apr10g1221 1032 Pfam SET domain 901 1006 IPR001214 GO:0005515
Apr10g1221 1032 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 1032 - -
Apr10g1221 1032 SMART PostSET_3 1016 1032 IPR003616 -
Apr10g1221 1032 CDD PHD_TCF19_like 417 467 - -
Apr10g1221 1032 ProSitePatterns Zinc finger PHD-type signature. 601 646 IPR019786 -
Apr10g1221 1032 ProSiteProfiles SET domain profile. 890 1007 IPR001214 GO:0005515
Apr10g1221 1032 MobiDBLite consensus disorder prediction 46 72 - -
Apr10g1221 1032 SUPERFAMILY Tudor/PWWP/MBT 226 349 - -
Apr10g1221 1032 SUPERFAMILY SET domain 883 1029 IPR046341 -
Apr10g1221 1032 SUPERFAMILY FYVE/PHD zinc finger 414 475 IPR011011 -
Apr10g1221 1032 PANTHER PHD FINGER PROTEINS 1 1032 - -
Apr10g1221 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 650 768 IPR013083 -
Apr10g1221 1032 Pfam PHD-finger 613 647 - -
Apr10g1221 1032 ProSiteProfiles Extended PHD (ePHD) domain profile. 652 767 IPR034732 -
Apr10g1221 1032 ProSiteProfiles Zinc finger PHD-type profile. 598 649 IPR019787 -
Apr10g1221 1032 Pfam PHD-finger 416 469 IPR019787 -
Apr10g1221 1032 Gene3D - 491 576 IPR010919 -
Apr10g1221 1032 CDD PHD_ATX3_4_5_like 600 646 IPR042011 -
Apr10g1221 1032 SMART PHD_3 600 647 IPR001965 -
Apr10g1221 1032 SMART PHD_3 711 767 IPR001965 -
Apr10g1221 1032 SMART PHD_3 416 468 IPR001965 -
Apr10g1221 1032 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1032 IPR025780 -
Apr10g1221 1032 ProSiteProfiles Zinc finger PHD-type profile. 414 470 IPR019787 -
Apr10g1221 1032 SUPERFAMILY FYVE/PHD zinc finger 599 663 IPR011011 -
Apr10g1221 1032 SMART PWWP_4 233 302 IPR000313 -
Apr10g1221 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 649 IPR013083 -
Apr10g1221 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 473 IPR013083 -
Apr10g1221 1032 SMART set_7 890 1013 IPR001214 GO:0005515
Apr10g1221 1032 Gene3D - 221 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1221 Apr-Chr10 24581895 24591325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1221 373 441 EF-hand Containing Proteins AT5G28340 56.522 7.60e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr10g1221 zf-HC5HC2H_2 2e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1221 - - gmx:100793624 1755.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1221 10 24581895 24591325 Apr10g1221 10 24581895 24591325 ECH