Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1213 ATGAAGGTTGAGGTGGGGTTGGGAGGGTTGTGGAATGAAGATGAGAAAGCGATGGTGGTGGAGGTTCTCGGAAGTAGTGCTTTTGATTACTTGGTTGTGAATTCGGTTTCGAATGAGAATTTGTTAATGGCGTTTGGGAGTGGCGAGAATCTGCAAAACAAGCTTTCGGATCTTGTGGAACGCCCCAACGTGTCTAACTTCAGTTGGAACTATGCGATCTTTTGGCAAATTTCGCAGTCCAAGTATGGTGAATGGGTTTTGGGTTGGGGAGATGGGTGTTGTAGGGAGCCAAGGGAGGGAGAAGAAGGTGGAGGAGTGAGAGGGGTGTTGAACCTTTGTGTTGAGGATGAGAATCAGCAGAGGATGAGGAAGAGGGTGTTGCAGAAGCTGCACACAACGTTTGGGGGTTCTGATGAGGACAATTATGCTTTTGGGTTGGACCGTGTTACGGATACTGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCTAGTGGACATGGTGGTCCAGGTAAGTGTTTTGCTTCTGGGAAGCATTTGTGGCTCTCTGATGTCTTGAAATCTACTTCTGATTACTGTGTGCGGTCATTTTTGGCCAAATCTGCTGGAATTCAGACAATTGTTTTGGTCCCTACTGACTTGGGTGTGGTGGAGATGGGTTCTGTGAGAATGGTGGGAGAGAGCTTTGAGTTGTTGCAGGTTGTGAAATCTGTGTTTTCTGCACAGTCATCATTCTCCGCAGTTAAGCCCATTGCACCATTGGATGTGGTGAATGAAAAGAGAGATGAGAATGGTCTTCTTTCTGGTTTGGCAATTGGTGACAATAATAGTAATAGTGAGAGTCATAACGGTAATAGAGTAGAGGGAATTGGAGTTCATAAGATTTTTGGGCAGGATTTGAATTGTATGAATCAATTCAGGGAGAAACTTGCTGTTAGGAAAATGGAGGATAGGTCATGGGGAGGTCATACCAATGGGAATAGTATTAGCTTTCCAAATGGTATACATGGTTCTAGTTTGGGAGGAGGTCGAGTTGCGAGGCAGCCTGGTCCTATTGAAATTTTTACTCCTAGGTCCTCTACAAGCAATGTGCCGGAGCTAGCTAATGGCGGGAGGGTGGGTTTCATGCATGACAAGTATCAGCAGCAACGGCAGGTGCAAATGCAAATTGATTTCTCGGGAGCCATGTCAAGGCCTTCCGTGGGATCGGTCATTGCTGAATCTGAGCTTTCTGATGTTGAGGCCTCGTGCAAGGAGGAGAAACCAAGTGTCGCCGATGACCGGAGGCCAAGGAAGCGGGGAAGAAAGCCGGCTAATGGAAGGGAAGAACCTCTTAATCATGTTGAGGCAGAGAGGCAAAGGCGTGAGAAGCTGAACCAGCGTTTCTATGCTTTACGAGCTGTTGTGCCAAATATCTCTAAGATGGACAAGGCATCACTGTTGGGAGATGCAATTGCTTACATCAATGAGCTTCAAGCAAAGCTCAAGACCATGGAGTCCGAGAGAGAGCAATTTGGAAGCACCTCTAGGGATGGATCAGTATTGGAGGCCAATTCAAGAGCAGAAAATCATCATAATAGAGCTCCTGATGTGGATATTCAAGCTGCACAAGATGGAGTCATTGTAAATGTGAGCTGCCCCATCGATGTTCACCCGGTTTCAAAAGTCATTCAGACATTGAAAGAGGCAGAAATTGGTGTTGTTGAGTCAAAACTCACTGCTGCAAACGATACTGTCTTGCACAACTTCGTCATTAAAACGCAAGGACATGAGTATCTGACAAAGGAGAAGTTGGTCGCTTTAATTTCCAGAGAATCGAACTCCTTACAGCCATTATGA 1842 0.4587 MKVEVGLGGLWNEDEKAMVVEVLGSSAFDYLVVNSVSNENLLMAFGSGENLQNKLSDLVERPNVSNFSWNYAIFWQISQSKYGEWVLGWGDGCCREPREGEEGGGVRGVLNLCVEDENQQRMRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPSGHGGPGKCFASGKHLWLSDVLKSTSDYCVRSFLAKSAGIQTIVLVPTDLGVVEMGSVRMVGESFELLQVVKSVFSAQSSFSAVKPIAPLDVVNEKRDENGLLSGLAIGDNNSNSESHNGNRVEGIGVHKIFGQDLNCMNQFREKLAVRKMEDRSWGGHTNGNSISFPNGIHGSSLGGGRVARQPGPIEIFTPRSSTSNVPELANGGRVGFMHDKYQQQRQVQMQIDFSGAMSRPSVGSVIAESELSDVEASCKEEKPSVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESEREQFGSTSRDGSVLEANSRAENHHNRAPDVDIQAAQDGVIVNVSCPIDVHPVSKVIQTLKEAEIGVVESKLTAANDTVLHNFVIKTQGHEYLTKEKLVALISRESNSLQPL* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1213 613 Pfam Helix-loop-helix DNA-binding domain 447 493 IPR011598 GO:0046983
Apr10g1213 613 SMART finulus 449 498 IPR011598 GO:0046983
Apr10g1213 613 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 443 492 IPR011598 GO:0046983
Apr10g1213 613 CDD bHLH_AtAIB_like 440 505 - -
Apr10g1213 613 MobiDBLite consensus disorder prediction 416 454 - -
Apr10g1213 613 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 608 - -
Apr10g1213 613 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 446 506 IPR036638 GO:0046983
Apr10g1213 613 Coils Coil 482 509 - -
Apr10g1213 613 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 240 IPR025610 -
Apr10g1213 613 Gene3D - 436 508 IPR036638 GO:0046983
Apr10g1213 613 PANTHER MYC 1 608 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1213 Apr-Chr10 24499565 24502401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1213 10 611 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.027 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr10g1213 bHLH-MYC_N 1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1213 - - gmx:100807078 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1213 10 24499565 24502401 Apr10g1213 10 24499565 24502401 ECH
Apr4g0932 4 7556040 7559634 Apr10g1213 10 24499565 24502401 PCT