Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1210 ATGGCACATCTTCAGTGTAATCTCAGGGGCCCCGGGAGTGGTTGTTCTCAACCGGAAAAAGGTTTGAAGGATGATGATCTGTATAGAGAGCTATGGAAGTTGTGTGCAGGGCCTTTGGTGGATGTTCCTCGTACTGGAGACAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCTACGGATCAGGAATTGAACCAGGAAATTCCCCATTTCAATCTTCCCTCCAAGATTTTTTGCCGTGTTGTGAACATTCAGTTGTTGGCGGAACAAGACACTGATGAGGTTTATGCTTGCATTGCTTTGCTTCCAGAATCAGATCAAACTGAGCCTATAAATCCTGATCTAGATGTTTCTGAGGCCCCAAAACAGAAGTTTCACTCATTTTGCAAGATATTAACGGCCTCTGATACTAGCACACATGGAGGGTTTTCTGTTCTGCGGAAGCATGCTACCGAGTGCTTGCCTCCATTGGACATGACCCCACCAACCCCAACTCAGGAGTTGGCTGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCACATATATAGAGGTCAACCAAGGAGACACTTACTTACAACTGGCTGGAGTACATTTGTTGCATCCAAAAGATTGGTTGCTGGAGATGCTTTTGTGTTTCTAAGGGGAGAGCAAGGGCAATTGAGAGTTGGTGTTAGGCGGTTGGCTCGGCAGCAGAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCAGTTATGACTCGTACCATGTTTTTGGTTTATTACAAGCCAAGGACAAGCCAGTTTATTGTTGGCTTGAACAGATATCTAGAGGCTGTCAACAACAAGTTTTCAGTTGGCATGCGTTTCAAGATGCGATTTGAGGGCGATGACTCACCTGAGAGAAGGTTTTCTGGTACTATTGTTGGGGTCGGGGATGCGTCTCCAGGATGGTCAAATTCACAGTGGCGGTCCTTGAAGGTCCAATGGGATGAACCAGCAACAATTCCAAGGCCTGATAGAGTTTCTTGCTGGGAGATAGAGCCTTTTGTAGCTTCTACTGCTTTGAATGTCACACAACCAGTGGTGAAGGGCAAAAGGTCTAGGCCTAATGATGTTTCCTCTTCTGGTGGTGCTGCTGAAGTCCAAAGCAAGGAAAATCAGGTTGTATGCTCTCTTAGACAGAAAGACGTTAATAACAATCCTATTAATGCTAACTCCAGCAGCTCTAGAGCGCGGATGGAAGGAATGTGGTCTTCTTCACCCCATTTGAATGTCACTTCTAACCTCTTTTCTGATCCCAATAACAAGAACAGCGTTACTGTGCGATCGTCCATATCTAGTTATCCCAATGTTTCATCTAGATCAAGCGATGGTCCCACGGCAGAAGATGTGAAAAAGACTGAGAATTCCCTAGATTGCTGGCTATTTGGAGTTAATTTGACTAACAAATCTACCATTGTCATTACTCCTTCAAAGAGAGAATTAAGATGTCCTAGTTTAACTATTGTTCCTAGTGGTCCCAAAGAATCTATTCCTGCAGCTGCATGTGAATCTGGGAGGGTTCAGACTCCTAACTATTCACTGTCCAACAAGGGGCAGAAGCAAATTATTTCTGATGCATCACCAAATGAGTGGCAGAACAAGCAGGCCACTGTACCATCCATGAGGACGCGGACTAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCACTTGACTTGACCATGTTGAATGGCTATGATGATCTCATAGAAGAGATTGAGAAATTGTTTGATATCAAAGAAGAGTTGCGTTCACAAAACAAATGGGCAGTTACTTTCACTGATGATGAAAATGACATGATGCTTGTTGGTGATGATCCATGGCCGGAATTTTGCAACATGGTGAAGAGGATCTTCGTTTGTTTAAGGGAGGACTTGAAAAAGATGAAATGCAAGCTACCTACTTCTTCATCAGAGGTTGAAGAGACTCTATTGAGCCCAGATTCACAAAATAGGGATGAGACTCAACATTCTCACATGCCTTAG 2061 0.444 MAHLQCNLRGPGSGCSQPEKGLKDDDLYRELWKLCAGPLVDVPRTGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPSKIFCRVVNIQLLAEQDTDEVYACIALLPESDQTEPINPDLDVSEAPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTPPTPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEQGQLRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVMTRTMFLVYYKPRTSQFIVGLNRYLEAVNNKFSVGMRFKMRFEGDDSPERRFSGTIVGVGDASPGWSNSQWRSLKVQWDEPATIPRPDRVSCWEIEPFVASTALNVTQPVVKGKRSRPNDVSSSGGAAEVQSKENQVVCSLRQKDVNNNPINANSSSSRARMEGMWSSSPHLNVTSNLFSDPNNKNSVTVRSSISSYPNVSSRSSDGPTAEDVKKTENSLDCWLFGVNLTNKSTIVITPSKRELRCPSLTIVPSGPKESIPAAACESGRVQTPNYSLSNKGQKQIISDASPNEWQNKQATVPSMRTRTKVQMQGVAVGRALDLTMLNGYDDLIEEIEKLFDIKEELRSQNKWAVTFTDDENDMMLVGDDPWPEFCNMVKRIFVCLREDLKKMKCKLPTSSSEVEETLLSPDSQNRDETQHSHMP* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1210 686 MobiDBLite consensus disorder prediction 373 396 - -
Apr10g1210 686 MobiDBLite consensus disorder prediction 1 20 - -
Apr10g1210 686 MobiDBLite consensus disorder prediction 452 469 - -
Apr10g1210 686 SUPERFAMILY DNA-binding pseudobarrel domain 123 261 IPR015300 -
Apr10g1210 686 Gene3D - 293 365 - -
Apr10g1210 686 Gene3D - 129 233 IPR015300 -
Apr10g1210 686 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Apr10g1210 686 MobiDBLite consensus disorder prediction 452 475 - -
Apr10g1210 686 CDD B3_DNA 130 232 IPR003340 GO:0003677
Apr10g1210 686 MobiDBLite consensus disorder prediction 379 396 - -
Apr10g1210 686 MobiDBLite consensus disorder prediction 657 686 - -
Apr10g1210 686 SMART B3_2 132 234 IPR003340 GO:0003677
Apr10g1210 686 ProSiteProfiles PB1 domain profile. 567 648 IPR000270 GO:0005515
Apr10g1210 686 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 663 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr10g1210 686 MobiDBLite consensus disorder prediction 671 686 - -
Apr10g1210 686 PANTHER AUXIN RESPONSE FACTOR 11 13 663 - -
Apr10g1210 686 Pfam Auxin response factor 258 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr10g1210 686 SUPERFAMILY CAD & PB1 domains 563 643 - -
Apr10g1210 686 Coils Coil 591 611 - -
Apr10g1210 686 Gene3D - 563 655 - -
Apr10g1210 686 Pfam AUX/IAA family 560 603 IPR033389 -
Apr10g1210 686 Pfam AUX/IAA family 609 645 IPR033389 -
Apr10g1210 686 Pfam B3 DNA binding domain 132 232 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1210 Apr-Chr10 24442387 24447312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1210 27 654 B3 DNA Binding Superfamily AT4G23980 56.329 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr10g1210 B3 6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1210 K14486 - gmx:100790981 1169.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1210 10 24442387 24447312 Apr10g1210 10 24442387 24447312 ECH