Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1197 ATGAGACCGGTTTTTGCTGGGAACTTGGAGTACGATACCCGTCAATCAGAGCTTGAACGCTTGTTCTCCAAGTATGGCAGGATTGACCGCGTAGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGCGATGCAGAAGAAGCAATTCGTGCACTTGACAATATTCCCTTTGGTTATGAAAAGCGAAGGCTATCTGTGGAGTGGGCTAGGGGTGAGCGAGGGCGTCATCGCGATGGCTCAAAGGCAAACCAGAGGCCAACAAAAACTCTCTTTGTGATTAACTTTGACCCAATCCGTACTAGAGTTCGTGATATAGAAAAACACTTTGAACCTTATGGAAAGGTTCTTCATGTTAGAATTCGTCGGAATTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTAGAGTGTACAAATATGAGTAAGATACTGGACAGGGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATGGTGAGAGGGGCGACAATTATGACAGTCCAAGAAGAGGGGGTTATGAGAGATCACCCAGTCCAGCTTATCGCAGGCGACCAAGTCCTGATTATGGTCGTCCACGCAGCCCTGTGTATGATAGGTATAATGGACCAGATAGGCGGAGGAGTCCTGATTATGGCAGACGCAGGAGTCCTGATTATGGCAGACACAGGAGTCCTGAATATGGTAGATACCGCAGCCGCTCACCTGTACGAAGGTCACGAACTTAA 744 0.4677 MRPVFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNIPFGYEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYERSPSPAYRRRPSPDYGRPRSPVYDRYNGPDRRRSPDYGRRRSPDYGRHRSPEYGRYRSRSPVRRSRT* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1197 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Apr10g1197 247 MobiDBLite consensus disorder prediction 204 239 - -
Apr10g1197 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Apr10g1197 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Apr10g1197 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Apr10g1197 247 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 202 IPR029537 GO:0000398|GO:0005681
Apr10g1197 247 SUPERFAMILY RNA-binding domain, RBD 2 164 IPR035979 GO:0003676
Apr10g1197 247 MobiDBLite consensus disorder prediction 164 247 - -
Apr10g1197 247 Gene3D - 1 83 IPR012677 -
Apr10g1197 247 Gene3D - 84 173 IPR012677 -
Apr10g1197 247 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 202 - -
Apr10g1197 247 SMART rrm1_1 3 70 IPR000504 GO:0003723
Apr10g1197 247 SMART rrm1_1 92 158 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1197 Apr-Chr10 24296318 24299020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1197 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 24.176 3.27e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1197 K12893 - gmx:100797709 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1197 10 24296318 24299020 Apr10g1197 10 24296318 24299020 ECH