Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1196 ATGAAGATTCCAATGGAGGAAAGGCCATTCCCTGCATGGTCATGGTCCATTGAACAGTGCTTGAAGGAATATGGAGTGAAACTGGAGAAGGGTCTAAGTTCCTATGAGGTTCAGAAGCGGCGTGAGAAATATGGTTGGAATGAGCTAGCAAAAGAGAAGGGGAAGCCCTTGTGGGAACTGGTATTAGAACAATTTGATGACATGCTGGTAAAGATACTTTTGGTTGCAGCCTTCATATCATTTCTTTTGGCTTATTTTCAAGGAAATGTATCAGGGGAATCTGGATTTGAAGCTTATGTGGAGCCACTTGTGATCATTTTGATTTTAGTCCTTAATGCTATTGTTGGTGTTTGGCAAGAGAACAATGCTGAAAAGGCTCTTGAAGCTCTTAAAGAGTTGCAATGTGAGTCTGGAAAAGTGTTAAGGAATGGATATTTTGCGCCTGATTTGCCTGCAAGAGAGCTTGTTCCTGGTGATGTTGTGGAATTGCATGTTGGAGATAAAGCCTCTGCTGACATGAGAGTTGCAGCTTTGAAAACCTCAACTTTGAGAGTTGAGCAAAGTTCTTTAACTGGAGAAGCAATGCCTGTTCTCAAAGGTACCAATCCTGTTTTCTTGGATGACTGTGAAATACAGGCCAAAGAAAACATGGTCTTTGCAGGCACCACTGTTGTCAATGGAAGCTGTCTTTGTATTGTTATTACCACAGGAATGAACACTGAAATTGGAAAGATACAGAAGCAAATACATGAGGCTTCTCAGGAGGACAGTGATACCCCTTTGAAGAAGAAGCTAGATGAGTTTGGTGGCAGGCTTACCACTGCAATTGGGCTAGTTTGTCTTATTGTTTGGGTTATTAACTACAAAAATTTCATTTCTTGGGATCTTGTGGATGGATGGCCCTCAAACATCCAATTTTCTTTCCGAAAGTGCACTTACTATTTCAAGATTGCTGTTGCTCTTGCTGTTGCTGCAATCCCGGAGGGTCTTCCTGCAGTTATCACAACTTGTTTAGCACTTGGTACAAGGAAAATGGCTCAAAAGAATGCAATTGTGAGAAAGCTTCCAAGCGTGGAAACTTTGGGATGTACTACTGTGATCTGTTCAGACAAAACTGGTACTTTGACAACAAATCAAATGGCTGTGACACAGTTCTTTACTTTGGGTGGGAAAACCAATGCTTCTAGAATCATTAGTGTTGAAGGGACCACTTATGATCCCAAAGATGGGGGAATTGTTGATTGGAGCTGCTATAACATGGATGCTAATTTGCTAGTCATGGCTGAAATATGTGCTGTTTGTAATGATGCTGGGATTTACTTTGATGGTCGCCTATTTAGAGCTACAGGTTTGCCTACTGAAGCTGCTCTCAAAGTTTTGGTTGAAAAGATGGGAGTTTCAGATGTGAAGGCAAGGAACAAAACTGGAGATAATGCACAACTTGGTGCAAACAACATGGTGGATAGCAACACAGTGAAGTTAGGTTGTTGTGAATGGTGGAATAAAAGATCCAAAAGGGTAGCTACATTGGAGTTTGATCGCATTCGGAAGTCAATGAGTGTTATTGTTCGTGAACCAAATGGACAAAATCGGCTTCTTGTCAAGGGAGCTGTTGAGAGTTTACTCGAGCGTAGTTCACATGTTCAACTTGCTGATGGATCCCTGGTTCCAATAGATGATCAATGTAGGGAACTACTTCTTCAAAGACTCCAGGAGATGAGTTCAAAGGGATTGCGTTGTTTGGGCTTGGCATATAAGGATGAGTTGGGAGAATTTTCAGACTATTATGCAGACACTCATCCTGCCCACAAGAAATTGCTTGATCCAACACGCTACTCATCCATTGAAAGTAATCTAGTTTTTGTTGGTATTGTTGGCTTAAGAGACCCTCCTCGTGAGGAAGTTAATAAAGCAATTCAGGATTGTAAGGAAGCTGGTATAAGAGTTATGGTAATAACTGGTGATAACAAGTCAACAGCAGAGTCTATTTGTAGGGAAATCAAATTATTCTCTAAAGATGAGGATCTTACAGGACAAAGTTTGACTGGTAAGGAATTCATATCTCTTTCTCAATCAGACCAAGTTAAAATATTGTTGAGACCTGGAGGCAAGGTTTTCTCTAGAGCTGAGCCCAGACACAAGCAAGAAATTGTGAGACTTTTGAAGGAAATGGGGGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGCACCTGCACTTAAGCTTGCTGACATAGGGATTGCTATGGGCATAACTGGGACTGAGGTTGCAAAAGAAGCTTCAGATATGGTGCTTGCAGATGACAATTTTAGTACCATTGTTTCAGCAGTTGCTGAGGGTCGCTGTATTTATAATAACATGAAATCATTTGTCAGGTACATGATATCATCAAATGTTGGGGAAGTAATATCCATATTCTTGACTGCTGCTCTGGGGATCCCAGAATGCATGATACCAGTGCAACTTTTGTGGGTGAATTTGGTTACTGATGGTCCACCTGCAACAGCTCTTGGTTTCAACCCTGCTGATGTTGATATCATGCAGAAGCCACCTCGCAAAAGTGATGATGCGCTTATAAATTCTTGGGTTCTTTTCCGTTATCTGGTAATTGGTTCCTATGTCGGACTTGCAACAGTAGGAATTTTTGTCTTGTGGTACACACAAGCATCTTTTCTTGGCATCAATCTTGTGAATGATGGTCACACAACTATAGAATTATCTCAGCTTCGCAACTGGGGGGAGTGTCACTCATGGTCTAATTTTACTGTTGCTCCATTTGCTATTGGAGGGGGTCGCTTGATCACATTTTCAAATCCTTGTGACTATTTTTCAGTTGGCAAAGTAAAGGCCATGACTCTCTCTCTCTCAGTCTTGGTGGCAATTGAGATGTTTAATTCGTTGAATGCCCTCTCAGAAGACAATAGCTTGAGGAAATTACCACCTTGGAGGAATCCTTGGCTTTTGGTAGCCATGTCAATATCACTAGGACTCCACTGCCTCATACTCTATGTGCCATTCCTAGCAGATGTGTTTGGTGTTGTTCCACTTAGTTTGAATGAGTGGTTTATGGTCTTTTTAGTATCAGCACCTGTTGTTCTTATTGATGAGATTCTGAAATTAATAGTAAGGAGTCAAAGGAGGTTGACTAAGGAGAAAGAAGCATGA 3168 0.4129 MKIPMEERPFPAWSWSIEQCLKEYGVKLEKGLSSYEVQKRREKYGWNELAKEKGKPLWELVLEQFDDMLVKILLVAAFISFLLAYFQGNVSGESGFEAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQCESGKVLRNGYFAPDLPARELVPGDVVELHVGDKASADMRVAALKTSTLRVEQSSLTGEAMPVLKGTNPVFLDDCEIQAKENMVFAGTTVVNGSCLCIVITTGMNTEIGKIQKQIHEASQEDSDTPLKKKLDEFGGRLTTAIGLVCLIVWVINYKNFISWDLVDGWPSNIQFSFRKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTQFFTLGGKTNASRIISVEGTTYDPKDGGIVDWSCYNMDANLLVMAEICAVCNDAGIYFDGRLFRATGLPTEAALKVLVEKMGVSDVKARNKTGDNAQLGANNMVDSNTVKLGCCEWWNKRSKRVATLEFDRIRKSMSVIVREPNGQNRLLVKGAVESLLERSSHVQLADGSLVPIDDQCRELLLQRLQEMSSKGLRCLGLAYKDELGEFSDYYADTHPAHKKLLDPTRYSSIESNLVFVGIVGLRDPPREEVNKAIQDCKEAGIRVMVITGDNKSTAESICREIKLFSKDEDLTGQSLTGKEFISLSQSDQVKILLRPGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRCIYNNMKSFVRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKSDDALINSWVLFRYLVIGSYVGLATVGIFVLWYTQASFLGINLVNDGHTTIELSQLRNWGECHSWSNFTVAPFAIGGGRLITFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEDNSLRKLPPWRNPWLLVAMSISLGLHCLILYVPFLADVFGVVPLSLNEWFMVFLVSAPVVLIDEILKLIVRSQRRLTKEKEA* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1196 1055 SUPERFAMILY Calcium ATPase, transduction domain A 148 248 IPR008250 -
Apr10g1196 1055 SFLD p-type atpase 349 784 IPR044492 -
Apr10g1196 1055 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 8 1051 - -
Apr10g1196 1055 PRINTS P-type cation-transporting ATPase superfamily signature 186 200 - -
Apr10g1196 1055 PRINTS P-type cation-transporting ATPase superfamily signature 368 382 - -
Apr10g1196 1055 PRINTS P-type cation-transporting ATPase superfamily signature 623 634 - -
Apr10g1196 1055 PRINTS P-type cation-transporting ATPase superfamily signature 645 655 - -
Apr10g1196 1055 PRINTS P-type cation-transporting ATPase superfamily signature 731 750 - -
Apr10g1196 1055 PRINTS P-type cation-transporting ATPase superfamily signature 755 767 - -
Apr10g1196 1055 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 305 392 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr10g1196 1055 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 704 816 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Apr10g1196 1055 Gene3D - 63 1044 - -
Apr10g1196 1055 Pfam Cation transporting ATPase, C-terminus 816 1042 IPR006068 -
Apr10g1196 1055 ProSitePatterns E1-E2 ATPases phosphorylation site. 370 376 IPR018303 -
Apr10g1196 1055 Gene3D - 378 630 IPR023299 GO:0000166
Apr10g1196 1055 PRINTS Sodium/potassium-transporting ATPase signature 361 382 - -
Apr10g1196 1055 PRINTS Sodium/potassium-transporting ATPase signature 984 1008 - -
Apr10g1196 1055 CDD P-type_ATPase_SERCA 13 1044 - -
Apr10g1196 1055 Pfam Cation transport ATPase (P-type) 433 548 - -
Apr10g1196 1055 Pfam Cation transporter/ATPase, N-terminus 13 80 IPR004014 -
Apr10g1196 1055 PANTHER CALCIUM-TRANSPORTING ATPASE 8 1051 - -
Apr10g1196 1055 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 375 627 IPR023299 GO:0000166
Apr10g1196 1055 Pfam haloacid dehalogenase-like hydrolase 622 745 - -
Apr10g1196 1055 Gene3D - 365 776 IPR023214 -
Apr10g1196 1055 Pfam E1-E2 ATPase 135 348 - -
Apr10g1196 1055 SUPERFAMILY HAD-like 366 835 IPR036412 -
Apr10g1196 1055 SMART Cation_ATPase_N_a_2 11 85 IPR004014 -
Apr10g1196 1055 SFLD C1.7: P-type atpase like 349 784 - -
Apr10g1196 1055 Gene3D - 30 252 - -
Apr10g1196 1055 SUPERFAMILY Calcium ATPase, transmembrane domain M 11 1046 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1196 Apr-Chr10 24285403 24290908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1196 6 1053 Primary Pumps ATPases(2) AT4G00900 77.471 0.0 1688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1196 K01537 - gmx:100792952 1937.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1196 10 24285403 24290908 Apr10g1196 10 24285403 24290908 ECH