Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1194 ATGATGGTTCTAGATGTGTTAACTTCTGGTCCTACCGCAGCAGCCATTTCTCAAACTATAGATACCATTGCTGAGTTCCTAGTTTATGCTACTGATGTCCTTGTGGAGAAGGACAGTTTTAAGGAACTTGCAACTTACATGGAAAGAATTGAGCCTGTCTTAAAAGAATTGAGGAAAGGAAAAATCAGTGATTCTGAGGCATTCAACCGAGCTATCGAGACCATGAATAAAGAAATAAAAGGTGCAAAGCAACTGGCTCTAGAATGCAGGAACAAGAGCAAGGTTTATCTCCTATTTAGTTGCAGGTCCATTATTAAAAGCTTAGAAAACCACACAAAGAAACTGAGCACAGCACTTAGTCTTCTACCTTTAGCCTTATCAGGTCTTTCTTCAGGAGTGATTGAAGAAATTGAAAAGCTATGTGATCATATGCAGACAGCTGGGTTTAAGGCAGCTGTAGCTGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATAAGAGGAAATAATGTTGACCGTTCCTATGCCAATGATTTGCTGATTCTCATTGCAGAGGCAGTTGGGATTAAGAATGAGAAGTCAACAATAAAGATGGAGCTTCAAGAGTTTAAAAATGAAATTGAGAATGCTCGTGATAGGAAGGAATTAGCTGAAGCTATGCAAATGGATCAAATCATTGCTTTGTTGCAAAGGGCTGATGCAGCTTCATCACCAAGAGAAAGGGAACTCAAATACTTTGCAAAACGTCAATCGTTGGGTAGTCGATTCTTGGAGCCTTTGCAATCATTTTATTGCCCCATCACACAGGATGTTATGGTGGATCCTGTAGAAACTTCATCAGGACAGACCTTTGAGAGAATTGCAATAGAGAAGTGGTTTGCAGAAGGAAACAGATTGTGTCCCCTAACCTTGATTCCTTTAGACACATCAATTTTGAGACCTAACAAAACATTGAAACAATCCATAGAAGAATGGAAGGATAGAAATACAATGATTAAAATTGCTACTGTGAAAGAAAAAATCCAGTCTGGGAATGATGATGACATGCTGGATGGTCTGAGAACCCTTCAGGATTTGTGTATACAAAGAGACCAACACAGGGAATGGGTGATACTGGAGAATTACATACCAATTCTCATCCAAATTCTTGATTCAAGAAACCGTGATATACGGAACCATGCTCTTGTCGTCCTTGGCATGCTGGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTGCAACCGTTGACAATGCAATTGAATCTATTGTCCATTCTCTTGGACGTCGTCCAGAAGAAAGGAAGTTAGCCGTGGCATTGCTGCTTGAATTATCTGAGTATGATTCAGCACGAGAGCACATTGGAAAGGTTCAAGGTTGCATACTACTATTGGTAACTATGTCTAGCGGAGATGACAATCAAGCTGCTAGAGATGCAACAATGCTATTAGATAATCTTTCATACTCTGATCAGAATGTTATACAGATGGCAAAAGCAAATTATTTCAAACATTTATTGCAGCGTCTCTCCTCAGGACCAGATGATGTAAAGATGATTATGGCCACAAATTTAGCAGAAATGGAGTTAACTGACCACAATAAGGAATCCTTATTTGACGGTGGTGTACTGATTCCTCTTCTTCACATGTTCTCACACAATGATCTTCAGGTGAAAATAGTGGCTATTAAAGCTCTTAGGAATTTATCCAGTTCAAAGAAAAATGGACAGGAAATGATTAGACAGGGGGCTGCACGACGGCTACTTAACCTCCTTTTCCATCGCAGCATACAAACCTCTTGTTTATGGGAAGATGTAGCAGCCATAGTTGTGCAACTTGCTGCATCAACTATCTCTCAAGATGCTCAAAGACCTGTTTTATTACTAGAATCTGATGATGATGTTTTTAATCTCTTCTCTTTAGTTAGTGTCTCACAGCCGGGTGTGCAGCAAAACATTATTCAGACATTTTATGCCCTGTGTCAGTCACCTTTTTCAGCTTCATATATCAGAACCAAACTAAAAGAGTGCTCAGCTGTTCCGGAACTGGTTCGACTGTTTGAGAATGAGAGGCTAAAACTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTAGAGAGTTGTGATGAGGCAATCATACGGGGGAATGTGGATCAGAACTGCATCAATAATTTACTCCAAATCCTGAAATATTCATCTGATGAGGAGGAAAAGCTTTCTGCTATGGGAATAATATGCTATCTTCCAGAAAATCACCAGATAACTCAATGGCTTCTGGATGCAGGCACACTGCCAATCATTAAAAGTTATGTCCAAGATGGGAAAGACAGAGATCTTCAAAAGGATAAGTTTGTAGAGAATGCCATTGGTGCCCTACGCCGTTTCACAGTTCCAACAAACTTGGAATGGCAAAAAAGTGTAGCTGAAACTGGGATTATAACTATTTTAGTGCAGTTGCTTGAAAATGGAACTACCTTGACAAAACAACACGTGGCACAGTCTCTTACTCAATTTTCTAAAAGTTCAGTGAGTCTGAGCAAACCAGTAGCCAAGCGCAAAGGACTATGGTGTTTCTCAGCACCAGCTGATATTGGCTGCATAGTTCATGGAGGAATATGTTCTGTGAAATCATCATTTTGCCTTTTAGAGGCTAATGCAGTAGGACCACTTACAAGAACTCTTGGGGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTAATTGAAGATGAAAGACTCCAGAGTGGTAGTAAAGTGCTTGCAGAAGCAAATGCCATACCATTAATAATAAGGTTTCTTGGTTCTCCCTCTCCTAGGTTGCAGGAGAAGTCTCTAGATGCTTTGGAAAGGATTTTTCGGCTACTCGAGTTCAAACAGATGTATGGCGGCTTAGCTCAAATGTCTCTAGTGGACTTAACTCAAAGGGGTGATGGTAATGTGAGATCCATGTCAGCTAGAATATTGGCACATTTGAACGTGCTTCATGATCAATCTTCATATTTCTAA 3018 0.3996 MMVLDVLTSGPTAAAISQTIDTIAEFLVYATDVLVEKDSFKELATYMERIEPVLKELRKGKISDSEAFNRAIETMNKEIKGAKQLALECRNKSKVYLLFSCRSIIKSLENHTKKLSTALSLLPLALSGLSSGVIEEIEKLCDHMQTAGFKAAVAEEEILEKIESGIRGNNVDRSYANDLLILIAEAVGIKNEKSTIKMELQEFKNEIENARDRKELAEAMQMDQIIALLQRADAASSPRERELKYFAKRQSLGSRFLEPLQSFYCPITQDVMVDPVETSSGQTFERIAIEKWFAEGNRLCPLTLIPLDTSILRPNKTLKQSIEEWKDRNTMIKIATVKEKIQSGNDDDMLDGLRTLQDLCIQRDQHREWVILENYIPILIQILDSRNRDIRNHALVVLGMLAKDNEEAKERIATVDNAIESIVHSLGRRPEERKLAVALLLELSEYDSAREHIGKVQGCILLLVTMSSGDDNQAARDATMLLDNLSYSDQNVIQMAKANYFKHLLQRLSSGPDDVKMIMATNLAEMELTDHNKESLFDGGVLIPLLHMFSHNDLQVKIVAIKALRNLSSSKKNGQEMIRQGAARRLLNLLFHRSIQTSCLWEDVAAIVVQLAASTISQDAQRPVLLLESDDDVFNLFSLVSVSQPGVQQNIIQTFYALCQSPFSASYIRTKLKECSAVPELVRLFENERLKLRASAVKLFSCLVESCDEAIIRGNVDQNCINNLLQILKYSSDEEEKLSAMGIICYLPENHQITQWLLDAGTLPIIKSYVQDGKDRDLQKDKFVENAIGALRRFTVPTNLEWQKSVAETGIITILVQLLENGTTLTKQHVAQSLTQFSKSSVSLSKPVAKRKGLWCFSAPADIGCIVHGGICSVKSSFCLLEANAVGPLTRTLGESDPGVCEASLDALLTLIEDERLQSGSKVLAEANAIPLIIRFLGSPSPRLQEKSLDALERIFRLLEFKQMYGGLAQMSLVDLTQRGDGNVRSMSARILAHLNVLHDQSSYF* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1194 1005 Gene3D - 338 630 IPR011989 -
Apr10g1194 1005 Gene3D - 631 857 IPR011989 -
Apr10g1194 1005 CDD RING-Ubox_PUB 263 303 IPR045210 -
Apr10g1194 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1005 - -
Apr10g1194 1005 Coils Coil 193 220 - -
Apr10g1194 1005 Coils Coil 72 92 - -
Apr10g1194 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 337 IPR013083 -
Apr10g1194 1005 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Apr10g1194 1005 SUPERFAMILY RING/U-box 248 331 - -
Apr10g1194 1005 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Apr10g1194 1005 SUPERFAMILY ARM repeat 785 995 IPR016024 -
Apr10g1194 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1005 - -
Apr10g1194 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Apr10g1194 1005 SMART arm_5 446 487 IPR000225 GO:0005515
Apr10g1194 1005 SMART arm_5 799 839 IPR000225 GO:0005515
Apr10g1194 1005 SMART arm_5 873 913 IPR000225 GO:0005515
Apr10g1194 1005 SMART arm_5 665 705 IPR000225 GO:0005515
Apr10g1194 1005 SMART arm_5 529 569 IPR000225 GO:0005515
Apr10g1194 1005 SMART arm_5 750 796 IPR000225 GO:0005515
Apr10g1194 1005 SMART arm_5 570 621 IPR000225 GO:0005515
Apr10g1194 1005 SMART arm_5 363 403 IPR000225 GO:0005515
Apr10g1194 1005 SMART arm_5 405 445 IPR000225 GO:0005515
Apr10g1194 1005 Pfam Armadillo-like 439 600 IPR006911 -
Apr10g1194 1005 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Apr10g1194 1005 Gene3D - 14 127 IPR036537 GO:0007166
Apr10g1194 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Apr10g1194 1005 Gene3D - 863 1003 IPR011989 -
Apr10g1194 1005 SUPERFAMILY ARM repeat 335 835 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1194 Apr-Chr10 24275128 24282518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1194 250 1005 U-box Gene Family AT1G76390 28.589 9.42e-65 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1194 - - gmx:100799969 1559.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1194 10 24275128 24282518 Apr10g1194 10 24275128 24282518 ECH