Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1185 ATGTTAGACAGCATGGAATATACTTATTCAGCAGAAGCAGAAACTTACACAAGTAGCAGCAGCACTCCATCGACTGCTATGAGAAAGAAGAAAAACAATAACAACACAAGAAGATTCAGTGATGAACAAATCAAATCATTGGAGTCCATGTTTGAGACAGAGTCAAGGCTTGAACCTAGAAAGAAGTTGCAGCTGGCAAGAGATCTTGGATTGCAACCAAGACAAGTTGCTATATGGTTTCAAAACAAGAGAGCTAGGTGGAAGTCAAAGCAACTTGAGAGAGAATACAGCATACTCCAAGCCAACTATAACAATCTGGCTTCACGTTTTGAAGCTCTAAAAAAGGAAAAGCAAACATTACTAATTCAGTTGCAGAAGCTGAATGATCTAATACAAAAGCCATTGGAGCAAAGTCAAAGATGTGCACAAGTAAAAGGAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAAGCTGAGGTGAAGCCAAGCCCGTCAATGGAAAGATCAGAACATGCACATGGTGTTCTTTCAGATGATGACACAAGCATAAAGGTAGAATACTTTGGCTTGGAAGATGAACCTGGCCTTCTGAATTTTGCTGAACATGGTGATGGTTCCTTGACATCACCAGAAGATTGGGGTACTTTTGAATCAGATGATCTATTAGGCCAATCAAGCAGTGATTACCAATGGTGGGATTTCTGGTCCTGA 729 0.406 MLDSMEYTYSAEAETYTSSSSTPSTAMRKKKNNNNTRRFSDEQIKSLESMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLEREYSILQANYNNLASRFEALKKEKQTLLIQLQKLNDLIQKPLEQSQRCAQVKGANSMDSESENGGTMKCEAEVKPSPSMERSEHAHGVLSDDDTSIKVEYFGLEDEPGLLNFAEHGDGSLTSPEDWGTFESDDLLGQSSSDYQWWDFWS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1185 242 SUPERFAMILY Homeodomain-like 15 92 IPR009057 -
Apr10g1185 242 Coils Coil 82 130 - -
Apr10g1185 242 Pfam Homeodomain 37 88 IPR001356 GO:0003677
Apr10g1185 242 SMART HOX_1 27 94 IPR001356 GO:0003677
Apr10g1185 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 6 242 IPR045224 GO:0003700
Apr10g1185 242 CDD homeodomain 37 91 IPR001356 GO:0003677
Apr10g1185 242 Pfam Homeobox associated leucine zipper 90 131 IPR003106 GO:0006355|GO:0043565
Apr10g1185 242 MobiDBLite consensus disorder prediction 10 30 - -
Apr10g1185 242 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Apr10g1185 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 6 242 - -
Apr10g1185 242 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Apr10g1185 242 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Apr10g1185 242 Gene3D - 16 93 - -
Apr10g1185 242 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Apr10g1185 242 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1185 Apr-Chr10 24168963 24170402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1185 20 242 Homeobox Transcription Factor Family AT2G46680 53.659 2.04e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr10g1185 Homeodomain 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1185 K09338 - gmx:100797862 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1185 10 24168963 24170402 Apr1g0623 1 7536901 7538488 ECH
Apr10g1185 10 24168963 24170402 Apr10g1185 10 24168963 24170402 ECH
Apr10g1185 10 24168963 24170402 Apr4g0951 4 7717267 7718316 ECH
Apr4g0951 4 7717267 7718316 Apr10g1185 10 24168963 24170402 PCT