Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1182 ATGGAGGACTTGATCATTTCTACTTCTTCATCATCCTCTTTGCCTCAACAAAACCCAACATCAATAACGCCAGCCCTTCAGCAAAAGCTTCAATTTTTACTCCAAGGCCAACCTGATTGGTGGGTCTATGCCATTTTCTGGCAGACAACAAACGACGACAATAACAACCTCATTTTATCCTTCGGAGAAGGCCATTTCCAAGGCACCAGAGAAACTTCCCCAAAAGTATTATCCACAGAACGCAAGAAAATCATGAAACCCATCATAAACGACAACGACGCTGAGTGGTTCTACGTCATGTCGTTGACCCGCACTTTCTCCATTACCAATTCTTCTTCCTCTTCTTCTTCTCTCCCTGGCAAGGCCTTCACTTTAGGCTCCGTGCTTTGGCTCAACGGCAAGCACGAGCTTCAATTCTACAGCTGCGAGAGATCCAACGAAGCACACGCGCACGGAATCCAAACGTTAGTATGCATCCCCACGCAAAACGGCGTCGTCGAAATGGGTTCCTACGACACAATCAAGCAAAACTGGACCCTCGTTCAACACGTTAAATCCCTCTTCCAATCTACCCCAGATCTCGTCCCTCTCGACAAGAACAACCCAATCCAAATCTTTGACGACCACAGCATCTCCTTCTCCGACATCGGCATCATCACCGGAATCCCAGAAAACAAAAAGAGAAAAGAAACCCAAACAGAACCCATCAAAATCACCAAAAACGACAATTTCCCCTCGCGCTTCAGTAAACTGCCCTTGGGCTCTTCTTACGTGGATTCCGAACATTCTGATTCGGATTGTCCAACGTTGTTACCAAGCTCAACAGAACAAAGAGAGCCGAAAAAGAGAGGGAGAAAACCGGTTCTTGGACGCGACACCCCAATGAACCACGTGGAAGCAGAGAGGCAGAGAAGAGAAAAGTTGAACCATCGATTCTACGCTTTAAGAGCGGTGGTTCCGAACGTTTCGAGGATGGACAAGGCTTCGTTGTTATCAGATGCAGTGGCTTACATCAACGAGTTGAAAGCGAAGATTGAAGAATTGGAGAGGGAGAGTGGGAAGAAGGTGAAGATGGAAATGGGTGATGGCATGGATAATCAAAGTACTTCAACCGTTGTGGATCAAAGAGGGCCTCATGGCTTTGCTCTTGAGATTGATGTGAAGATGGTTGGTGGTGATGCCATGGTTAGGGTTCAATCGGAGAATGTGAACCACCCAGGTGCGAGGTTAATGGGTGCATTGAGAGACTTGGAGTTTCAGGTTCATCATGCTAGCATGTCCTCTGTTAATGACCTCATGCTTCAAGATGTTGTCGTTAAGCTTCCTAATGGAATGAGAAGCGAAGAGGCTCTTAAATCTGCCATTCTCATGAGATTGGATCAGCAATGA 1389 0.4658 MEDLIISTSSSSSLPQQNPTSITPALQQKLQFLLQGQPDWWVYAIFWQTTNDDNNNLILSFGEGHFQGTRETSPKVLSTERKKIMKPIINDNDAEWFYVMSLTRTFSITNSSSSSSSLPGKAFTLGSVLWLNGKHELQFYSCERSNEAHAHGIQTLVCIPTQNGVVEMGSYDTIKQNWTLVQHVKSLFQSTPDLVPLDKNNPIQIFDDHSISFSDIGIITGIPENKKRKETQTEPIKITKNDNFPSRFSKLPLGSSYVDSEHSDSDCPTLLPSSTEQREPKKRGRKPVLGRDTPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEELERESGKKVKMEMGDGMDNQSTSTVVDQRGPHGFALEIDVKMVGGDAMVRVQSENVNHPGARLMGALRDLEFQVHHASMSSVNDLMLQDVVVKLPNGMRSEEALKSAILMRLDQQ* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1182 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 341 IPR011598 GO:0046983
Apr10g1182 462 MobiDBLite consensus disorder prediction 1 20 - -
Apr10g1182 462 MobiDBLite consensus disorder prediction 255 304 - -
Apr10g1182 462 CDD bHLH_AtAIB_like 290 360 - -
Apr10g1182 462 PANTHER MYC 1 459 IPR045084 GO:0003700|GO:0006355
Apr10g1182 462 Gene3D - 290 356 IPR036638 GO:0046983
Apr10g1182 462 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 26 188 IPR025610 -
Apr10g1182 462 SMART finulus 298 347 IPR011598 GO:0046983
Apr10g1182 462 Pfam Helix-loop-helix DNA-binding domain 296 341 IPR011598 GO:0046983
Apr10g1182 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 352 IPR036638 GO:0046983
Apr10g1182 462 MobiDBLite consensus disorder prediction 256 275 - -
Apr10g1182 462 Coils Coil 331 358 - -
Apr10g1182 462 MobiDBLite consensus disorder prediction 276 304 - -
Apr10g1182 462 PANTHER TRANSCRIPTION FACTOR BHLH14 1 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1182 Apr-Chr10 24113716 24115422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1182 16 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.284 1.03e-74 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr10g1182 bHLH-MYC_N 2.7e-46 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1182 - K13422 gmx:100795733 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1182 10 24113716 24115422 Apr10g1182 10 24113716 24115422 ECH