Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1180 ATGAGCGCGAAGCCAGTGAGACCTCGTACACGTGTGGGAAAATACGAGCTGGGAAAAACCATTGGCGAGGGAAGCTTTGCTAAGGTCAAGTTCGCCAAGAACGTTGAGAATGGTAACCATGTTGCCATAAAAATCCTCGATCGTAATCACGTGCTTCGCCACAAGATGGTGGAACAGCTGAAGAAAGAGATTTCAGCGATGAAGATGATCAATCATCCAAACGTTGTCAAAATTTATGAGGCTACAAATGGGAGACTTAAAGAGGATGAAGCAAGAAGTTATTTCCAACAACTAATCAATGCAGTTGATTACTGCCATAGTAGAGGCGTGTATCACCGAGATTTGAAGCCAGAGAATCTTCTTCTGGACTCAAATGGTATTCTTAAAGTTTCAGATTTTGGATTGAGTACGTATGCACAACAGGAAGATGAACTCCTGCGAACTGCTTGTGGAACACCAAACTATGTTGCTCCTGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTACATCTGATATTTGGTCTTGTGGAGTCATTCTCTTTGTACTTATGGCTGGGTTCTTGCCCTTTGATGAGCCAAATCAACTAGCACTGTACAAAAAAATTGGGAGGGCTGAATTCACATGTCCATCTTGGTTTTCTCCTGAGGCAAAGAAACTATTGAAGCGCATTCTTGATCCGAATCCTTTAACTAGGATAAAAATTCCTGAGCTCTTAGAAGATGAATGGTTCAAAAAAGGATACAAACCAGCATCTTTTACAGAGGAAGAGGGTGTCAATGTAGATGATGTTGCTGCTGCTTTCAATGATTCTAAGGAAAATCTGGTGACAGAGAGAAAAGAGAAACCAGTGTCGATGAATGCCTTTGAGCTCATTTCTAGGTCACAAAGCTTCAATCTTGACAGTTTATTCGAGAAGCAGACAGGAATTGTAAAGCGAGAAACACATTTTACGTCACAGCGCCCTGCGAATGAAATTATGTCAAAAATTGAGGAAACAGCCAAGCCTCTAGGCTTTAATGTTCACAAAAGAAATTATAAGATGAAGTTGCAAGGTGATAAGAGCGGAAGGAAGGGTCACCTTTCAGTGGCTACAGAGGTTTTTGAAGTGGCTCCCTCCTTGCACATGGTGGAACTGCGAAAGACTGGGGGTGACACACTGGAGTTTCACAAGTTCTACAAAAACTTTTCATCGGGTTTGCAAGACATAGTGTGGCATTCGGAAGGAAAATAG 1233 0.4193 MSAKPVRPRTRVGKYELGKTIGEGSFAKVKFAKNVENGNHVAIKILDRNHVLRHKMVEQLKKEISAMKMINHPNVVKIYEATNGRLKEDEARSYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNGILKVSDFGLSTYAQQEDELLRTACGTPNYVAPEVLNDRGYVGSTSDIWSCGVILFVLMAGFLPFDEPNQLALYKKIGRAEFTCPSWFSPEAKKLLKRILDPNPLTRIKIPELLEDEWFKKGYKPASFTEEEGVNVDDVAAAFNDSKENLVTERKEKPVSMNAFELISRSQSFNLDSLFEKQTGIVKRETHFTSQRPANEIMSKIEETAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKFYKNFSSGLQDIVWHSEGK* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1180 410 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Apr10g1180 410 ProSiteProfiles Protein kinase domain profile. 15 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1180 410 Gene3D Phosphorylase Kinase; domain 1 2 82 - -
Apr10g1180 410 Pfam NAF domain 283 343 IPR004041 GO:0007165
Apr10g1180 410 SMART serkin_6 15 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1180 410 PANTHER - 82 408 - -
Apr10g1180 410 PANTHER - 9 81 - -
Apr10g1180 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 110 122 IPR008271 GO:0004672|GO:0006468
Apr10g1180 410 Gene3D Transferase(Phosphotransferase) domain 1 83 251 - -
Apr10g1180 410 Gene3D Kinase associated domain 1, KA1 280 406 - -
Apr10g1180 410 ProSiteProfiles NAF domain profile. 281 305 IPR018451 GO:0007165
Apr10g1180 410 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 9 81 - -
Apr10g1180 410 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 82 408 - -
Apr10g1180 410 CDD CIPK_C 287 400 - -
Apr10g1180 410 SUPERFAMILY Protein kinase-like (PK-like) 12 277 IPR011009 -
Apr10g1180 410 Pfam Protein kinase domain 15 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1180 410 Pfam Protein kinase domain 83 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1180 Apr-Chr10 24073552 24079456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1180 9 409 CBL-interacting serine-threonine protein kinases AT1G01140 70.370 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Apr10g1180 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1180 - - gmx:100794136 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1180 10 24073552 24079456 Apr10g1180 10 24073552 24079456 ECH