Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1179 ATGTCAGAAGGTGTAGAAATTGATGAGCATGTGGACTTTGATGAGGAAAATTACATGGAAGAATTGGATGATGACGGTGAAGAATGTATCGATGATGATGGAGAGGATGAAAGTAGCGATGAAAATGTTGAAGGACACAGATATGAGGACTCGGTAGTAGTGGCTGATGGAAGAGATCAATTGTCTGAAGCAGATAGAAGTGACATTGCCACTGAGTCTGTAGAAGATGGACAAAAACCATTTTTCATGGATGAAGAAGAGAAGCAGAAACATAATGAGCTTCTTGCCCTTCCTCCTCACGGTTCAGAAATCTTTATTGGTGGACTTCCTCGGGATGCATGTGAAGATGATTTGAGGGAATTGTGTGAGCCAATAGGTGATATTTTTGAGGTGCGGTTGATGAAAGATAGGGACACTGGAGAAGGTAAGGGTTATGCTTTTGTGGCTTTCAAAACAAAGAAGATGGCACAAAAGGCCATTGAAGAGTTTCACAATAAGGAATTCAAGAATAAAATTTTAAGGTGTTCCCTATCTGAGTCAAAACAAAGGTTGTTCATTGGTAATGTTCCAAAAAATTGGACCGATGATGAGTTTCGGAAAGTCATTGAGGGTGTTGGTCCTGGAGTTGAAATCATTGAGCTCATAAAGGACCCCCAAAATCCAAGTAGGAATCGTGGCTTTGCATTTGTATTGTATTACAATAATGCATGTGCTGATTATTCACGGCAAAAAATGTTAAATGTGAGTTTTAAGCTGGATGGTAATACCCCAACTGTTACATGGGCAGAACCAAAGAATTCATCTGATCATTCTGCTTCTTCACAGGTTAAAGCTCTTTATGTGAAAAACATACCTGAGAATACTAGTACTGAACAACTGAAGGAACTATTTTGTCATCACGGAGAAGTGACAAAAGTGGTCATGCCACCTAGCAAATCAGGAGGGAAGCGTGATTTTGGTTTCATTCATTATACCGAGAGGTCAAGTGCATTAAAGGCTATAAAAGACACAGAGAAATATGAAATTGATGGCCAAGCGCTTGAGGTTGTTCTTGCCAAGCCTCAAACTGAGAAAAGATCTGATGGAGGTTATGCCTTCAATCCCGGACTTCATCCAAACCATATTCCACATCCTGGTTATGGTGGTGGCATTCGCGGAAATCTTTACAACTCTTTAGGGGCTGGATATGGTGTTGCTACTGGTTTTCAACAGCCAGTGATATATGGTAGGGGTCCAATGCCATCAGGAATGCAGATGGTTCCAATGGTATTACGTGATGGTCAAATTGGCTATGTCCTTCAACAGCCTGGTGTACCGATGTCAGCTTCTCAACCGCACAGAAATGATCGGAGCAACGGTCCAAGTGGTCGGCCAGGAGGAGGAGGAGGAGGTAGTGGCAATCGCAATAGAAGGTACCGACCCTATTAG 1428 0.4202 MSEGVEIDEHVDFDEENYMEELDDDGEECIDDDGEDESSDENVEGHRYEDSVVVADGRDQLSEADRSDIATESVEDGQKPFFMDEEEKQKHNELLALPPHGSEIFIGGLPRDACEDDLRELCEPIGDIFEVRLMKDRDTGEGKGYAFVAFKTKKMAQKAIEEFHNKEFKNKILRCSLSESKQRLFIGNVPKNWTDDEFRKVIEGVGPGVEIIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMLNVSFKLDGNTPTVTWAEPKNSSDHSASSQVKALYVKNIPENTSTEQLKELFCHHGEVTKVVMPPSKSGGKRDFGFIHYTERSSALKAIKDTEKYEIDGQALEVVLAKPQTEKRSDGGYAFNPGLHPNHIPHPGYGGGIRGNLYNSLGAGYGVATGFQQPVIYGRGPMPSGMQMVPMVLRDGQIGYVLQQPGVPMSASQPHRNDRSNGPSGRPGGGGGGSGNRNRRYRPY* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1179 475 MobiDBLite consensus disorder prediction 8 39 - -
Apr10g1179 475 SUPERFAMILY RNA-binding domain, RBD 99 267 IPR035979 GO:0003676
Apr10g1179 475 CDD RRM3_hnRNPR_like 276 354 - -
Apr10g1179 475 SUPERFAMILY RNA-binding domain, RBD 272 372 IPR035979 GO:0003676
Apr10g1179 475 Gene3D - 264 387 IPR012677 -
Apr10g1179 475 MobiDBLite consensus disorder prediction 1 50 - -
Apr10g1179 475 MobiDBLite consensus disorder prediction 437 475 - -
Apr10g1179 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 354 IPR000504 GO:0003723
Apr10g1179 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Apr10g1179 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 347 IPR000504 GO:0003723
Apr10g1179 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 245 IPR000504 GO:0003723
Apr10g1179 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 173 IPR000504 GO:0003723
Apr10g1179 475 Gene3D - 9 182 IPR012677 -
Apr10g1179 475 PANTHER GEO13361P1-RELATED 2 473 - -
Apr10g1179 475 MobiDBLite consensus disorder prediction 437 451 - -
Apr10g1179 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 264 IPR000504 GO:0003723
Apr10g1179 475 Gene3D - 183 263 IPR012677 -
Apr10g1179 475 SMART rrm1_1 183 260 IPR000504 GO:0003723
Apr10g1179 475 SMART rrm1_1 103 176 IPR000504 GO:0003723
Apr10g1179 475 SMART rrm1_1 278 350 IPR000504 GO:0003723
Apr10g1179 475 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1179 Apr-Chr10 24066768 24072663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1179 104 466 Eukaryotic Initiation Factors Gene Family AT2G23350 26.154 4.07e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1179 K13161 - gmx:100790907 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1179 10 24066768 24072663 Apr10g1179 10 24066768 24072663 ECH