Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1176 ATGTCTCAACAAAGGCAATCTCTGATGGTGGGTGGTAACAACCTGGACCAATATAATGACACAACGTTTACCAAAATATTTGTTGGAGGGTTAGCTTGGGAGACTCAAAGGGACACAATGAAGAGGTATTTTGATCAATTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAACACTGGGAGATCCAAAGGTTATGGCTTTGTCACATTTAAGGATCCAGAGGCAGCCATGAGAGCATGTCAGAATCCATCCCCAGTTATTGATGGGAGGAGGGCAAATTGCAATCTTGCTTCACTTGGTGCAAACAAGAACAGACCACCAACTTTTCAGCATGGTGCAGCACGGTTCAGGCCTCCACCTGGACTATTGGCATCACCTGCTTATCATGGTTCTTCATCTACATTTTTCCATCAACCCCCTAGGCAATACACATTTCCCTATTCAGCATACGGATATTCTGGATATTCTCAAGACACCTTGTATCCCCCGAGCTATTATAATGTCTATGGAGTTCAACAATTTTCACCTTACTACCCATCCACTGGAGCATCTGGTGCAGTAGGCTTGATCCATAATATCTACCCTTTTTATGATCAATATGCACAGAGTGTCCAGGCTCATGGTTTTGGAATTCAATACCCCCAAATGGCACAATTTCCATTTTTGCCTCAGCATTATGGCTCCACTGGTATATTGTCAGTTCCTTCTTCAATGGCAGTGCCAACTACTAGTGCAGCAACAGGATCTGCAACCACAACTACAATATCAGCAAGTGTGGCAGCAACAGCGGTTGGTAGTACACAAGCCTCAGGAGTAGCTTCTGACGAGAATTCTACTTCTTGA 849 0.4382 MSQQRQSLMVGGNNLDQYNDTTFTKIFVGGLAWETQRDTMKRYFDQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTFQHGAARFRPPPGLLASPAYHGSSSTFFHQPPRQYTFPYSAYGYSGYSQDTLYPPSYYNVYGVQQFSPYYPSTGASGAVGLIHNIYPFYDQYAQSVQAHGFGIQYPQMAQFPFLPQHYGSTGILSVPSSMAVPTTSAATGSATTTTISASVAATAVGSTQASGVASDENSTS* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1176 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Apr10g1176 282 Gene3D - 1 114 IPR012677 -
Apr10g1176 282 SMART rrm1_1 25 97 IPR000504 GO:0003723
Apr10g1176 282 PANTHER - 1 274 - -
Apr10g1176 282 PANTHER BOULE-RELATED 1 274 IPR037366 GO:0003729
Apr10g1176 282 CDD RRM_RBM24_RBM38_like 24 99 - -
Apr10g1176 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Apr10g1176 282 SUPERFAMILY RNA-binding domain, RBD 14 119 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1176 Apr-Chr10 24045114 24046795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1176 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 4.38e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1176 - - gmx:100786208 482.256