Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1175 ATGCCGGAAAACATGAGTATATCTGTGAATGGACAATCTCAAGTCCCACCTGGTTTCCGCTTTCATCCAACTGAAGAGGAGCTTCTTCAGTACTACTTGAGGAAGAAGGTCTCTTATGAGAAGATTGACCTCGATGTGATTCGTGACGTTGATCTCAACAAGCTCGAACCATGGGACATACAAGAGAAATGCAAAATAGGAACCACTCCACAGAATGATTGGTACTTCTTTAGCCACAAAGATAAGAAGTACCCCACAGGAACACGCACCAATCGCGCCACTGCTGCAGGGTTCTGGAAGGCCACTGGGCGTGACAAAGTTATATACAGCAACGGTAAAAGGATTGGAATGAGAAAGACTCTGGTTTTCTACAAAGGAAGAGCCCCACATGGCCAAAAGTCAGATTGGATCATGCATGAATACAGGCTGGACGACAATAACACCAGCGACACCAATATTGTGTCAAATGTGATGGGAGATGCTGCTCAGGAAGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACCATCTCAAAACCCTAGACAGCCCTTTAGCTTCCTCAATCTCTGGGGAAGCTAGAAGAAGCCACTTGTTTGACTCATGTGACGAGGGTGCTTTGGAGCAAATACTTCAACAAATGGGAAGGGGTTGCAAGGAAGAGAACAACTACGAAGGAAACTACAACTATGGAAGGTTTGCAAGGCCTTTTGACACGGGTCTGAACAATGGCAGTGTCTACAATGATAGGTTCATGAAACTTCCAAGCCTAGAGAGCCCAAAATCCACAAGCATGGAGAGCCAGCACAACAACACTGATAACAACAATGACAACAACAACAATAATGGGTACCATCCCATTATTCCAGTGGACAATGAAGGGTCATTCACAACCCACCAGGTGAGTGGTGGTGACCCAAACATGGTTCATCCCTTGGAGGCATCATCATCAATGGTGCTAGGATCAGGTGGTGGAGGCCTCACCAATTGGGCAGCGTTGGATCGATTAGTTGCTTCTCAGCTGAACGGCCAAACAGAGGCTTCTAGGCAATTGGCATGCTTCAACGACCCCACCATGGGGTATTGCACTAGCGACCATGATCTTCAATTACCCACCCTTCGATCTTCATCATCCTCTTCAACGTCAACACACACAAGACCAGCAACTGCTACTGCAACTACTGCTGCTGCTTCTTACATTAGTCCCACACAGGACTACACTAGCGAGATTGACCTTTGGAACTTTGCTCGATCCACATCTTCCTTGTTGTCATCCTCTGAACCCCTGTGCCACGTGTCCAACACGTCAGTGTAG 1317 0.47 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNNTSDTNIVSNVMGDAAQEEGWVVCRIFKKKNHLKTLDSPLASSISGEARRSHLFDSCDEGALEQILQQMGRGCKEENNYEGNYNYGRFARPFDTGLNNGSVYNDRFMKLPSLESPKSTSMESQHNNTDNNNDNNNNNGYHPIIPVDNEGSFTTHQVSGGDPNMVHPLEASSSMVLGSGGGGLTNWAALDRLVASQLNGQTEASRQLACFNDPTMGYCTSDHDLQLPTLRSSSSSSTSTHTRPATATATTAAASYISPTQDYTSEIDLWNFARSTSSLLSSSEPLCHVSNTSV* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1175 438 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 8 385 - -
Apr10g1175 438 MobiDBLite consensus disorder prediction 258 283 - -
Apr10g1175 438 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Apr10g1175 438 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Apr10g1175 438 MobiDBLite consensus disorder prediction 373 394 - -
Apr10g1175 438 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Apr10g1175 438 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Apr10g1175 438 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1175 Apr-Chr10 24015549 24017551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1175 1 437 NAC Transcription Factor Family AT2G46770 53.452 2.30e-143 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr10g1175 NAM 4.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1175 - - gmx:100793308 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1175 10 24015549 24017551 Apr10g1175 10 24015549 24017551 ECH