Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1167 ATGCCACCAAACACACTTTCTCTCACCTTCATCATACCTTCTTCTCTTCTCACTCTAAAACGATTCGTTTCGCATTTCGGGCATGGAAGGCTTTCTCTAGAATCTTCTCTCTCTCCTTTGGCTTTAAGGAAAACCAGGGCGGTGGTTAACAGAGGAGAATTTTATGCGTACCCCGAAAACGATGACGTTTTTGGGTATGAAGAAGAGAGAGAGAGAGAGAAGAAGCTTGAAAGAGCATGTGAGGTGTATGTGTGCAATCTTCCCAGAAGCTTTAACGCAGCACACTTACTTGATATGTTCAGACCTTACGGAACCATTCTTTCTGTTGAGGTTTGCAGGAATCCTGAGACTGATGAAAGTAAAGGGTGTGGTTATGTCACATTGGGATCTATATACTCAGCAAGAAATGCGGTTGCTGAATTGGATGGATCAGATGTTGATGGGCGTGAAATGCGGGTTAGATTTTCAGTTGAGATGAATTCTAGAAGGATGAATTCTTCCAACAAGAAAATGATATATTATGAAGCTCCTCATAAGTTGTATGTTGGCAATCTTGTTAAGACTGTTAGACCTGAAGAGTTGAGAAATGTCTTCAGCAGATTTGGGAACATCGTTAGTTTAAGAGTGTTACATGATCATAAACATGGGAATAACCGAGTCTATGCGTTTCTCTCCTTTCAATCAGAGGCAGAACGTGACGCAGCAATGTCTCTCAATGGAAAAGAATGTTTTGGTCGTACATTAATAGTTAAAGAGGGCGTAGAGAAGACTCAGCCTTGA 780 0.4128 MPPNTLSLTFIIPSSLLTLKRFVSHFGHGRLSLESSLSPLALRKTRAVVNRGEFYAYPENDDVFGYEEEREREKKLERACEVYVCNLPRSFNAAHLLDMFRPYGTILSVEVCRNPETDESKGCGYVTLGSIYSARNAVAELDGSDVDGREMRVRFSVEMNSRRMNSSNKKMIYYEAPHKLYVGNLVKTVRPEELRNVFSRFGNIVSLRVLHDHKHGNNRVYAFLSFQSEAERDAAMSLNGKECFGRTLIVKEGVEKTQP* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1167 259 PANTHER OS02G0815200 PROTEIN 67 257 - -
Apr10g1167 259 SMART rrm1_1 179 251 IPR000504 GO:0003723
Apr10g1167 259 SMART rrm1_1 81 154 IPR000504 GO:0003723
Apr10g1167 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 255 IPR000504 GO:0003723
Apr10g1167 259 SUPERFAMILY RNA-binding domain, RBD 177 256 IPR035979 GO:0003676
Apr10g1167 259 CDD RRM_SF 180 251 - -
Apr10g1167 259 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 67 257 - -
Apr10g1167 259 Gene3D - 59 167 IPR012677 -
Apr10g1167 259 SUPERFAMILY RNA-binding domain, RBD 77 164 IPR035979 GO:0003676
Apr10g1167 259 Gene3D - 168 259 IPR012677 -
Apr10g1167 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 248 IPR000504 GO:0003723
Apr10g1167 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 152 IPR000504 GO:0003723
Apr10g1167 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1167 Apr-Chr10 23898054 23900211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1167 82 258 Eukaryotic Initiation Factors Gene Family AT3G16380 31.461 6.66e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1167 - - gmx:100792560 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1167 10 23898054 23900211 Apr10g1167 10 23898054 23900211 ECH