Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1166 ATGGCTAAAGTGACCGAGTTAAACGGCGTTATGAAAGAGACGGAGGTGGAGCAGAAACGGAATAACGATGATAACGGTGATCGCTCTGCTGAAGTAGTTCGATGGGAGAGATTTCTTCCTCGTGTGGCTCTCAGAGTTCTTCTTGTAGAAGCTGATCATTCTACTCGCCAAATCATCGCTGCGCTTCTTCAGAAATGCAGTTACACAGTTATTGCGGTTCCTGATGGATTAAAGGCATGGGAAACGTTGAAGAGGAAGGCACCTGATCTAGATCTCATTTTAACAGAAGTGGAGTTACCGGCAATATCTGGATATGCACTTCTTTCTTTAATCATGGAGCATGAGATTTGCAAAAACATTCCTGTCATAATGATGTCTTCCCATGATTCAGTTGGCATGGTGTTGAAATGCATGTTAAAAGGGGCATCTGATTTTCTTATAAAACCCATTCGGAGGAATGAGCTTAGGAACTTGTGGCAGCATGTATGGAGAAGGCACGCTATTAGCACTCCTCCTCAAAATACATTTCCACAAAAAAAACTTAAAACTGCCTCAGAAAACAATTCTGCAAGCAATAAATCTAGTGGTTCTGTGGCTTCCTCAAAGAAAAACAATGAATGCAGTGAGAGATTGAGTGAGGCTCAAGATGTGTCCCAGCTAAAGAGTTCTTCTAAATCGAGTGAGATTGATGATGTGGTGAAGCATGAAGATTTTACCAAAATTGAAAGGGAATCAGCTAAGCAGAACGGTGAAGCTGGAGTTGCTGCAGAGATATCAATTACAATTGCACCAGAAGCTGCAAAGTACAATGAAACTTTTGAATTGACAGATTTAAGGCTAGAACAAGTTCATGGTTGTGCTGAAACTGCAAACAAGGATGAAATTTTAAGATCTGACTTAGGCAGAGACAATCCTGGTATTAATACTGAGATACATGAATGCACTAATGAGCAGGTAGAACATTCTAAAGGAGCTATTGACTTGATTACCAAGTTTGAGAATCTTTCAAAGCACCACAATGAAAACTGCGGTCGTGGTAATGCAACCAAGTTTGACTGTGATACACAACTAGGACTTTCTTTAAGAAGAGATTTTCCTGGCAGCTCATGTAAAAAAGCACGTGAAACAACTGAGGAAACCCAAAGATTGAACCATTCAGATACTTCTGCTTTTTCTTGGTATAGTAATAGTAAGTTATTGCAGCCTCTTTTTCCAACACAATCTATTACGGCTACCAAAGTAAACAACCCCATTGTGGTTTCTGATGAATCTCATAAATTGTCTGAAATTACTTCTGGTAATTATTGCAACTATGGTTGCACAGATCAGAAGCAGGAGAATATGACCAGTACAGTCATTGGTCAGTGTAGCCAAGTTAGACCAAAATCATCTACCAGTCATTCTGGACTGTTACCTGCTACAGGGGTTATTTCTGATCTTAAGTCTAAGGGCCATGGTAATGCTTTCACTTCTGTGTTCCGAGCACAATCTGGTATTCGTTCCATGTGGAATCCGAAACCAGTCTGCCAGAAAGAGAGTTCTCCCTTTCCCACAAGTATTTCCTCCCACTCCAATCCTGAAAGTCACAACTCAGATCAACGATATGACTGGTCCAATGAAGCTACCCATGCTTATCTTAATCACAATGTAAAGGATAATATTCATTCGGATCTTGCAAGGCATGATTCTCCTGCTGCTGATCGAAGTGCTGGTAATAGTTTATGCCATGACACTGCAAATCGTATTAGTAGTAGTGCATATGGAAGCATGGGCAGTGGGAATGATGGAGATGCTACTTCAGCAATGGTATCCAGGAACAACCCTGAAGGTTTTAGTGATAATAGTTGCCATAATTCTGATGGATTAAGAGTGACAGATTCTCATCGCTACAGTCAAAGAGAAGCAGCTCTAACAAAGTTTCGGCTTAAGCGGAAAGAGAGATGCTATGAGAAAAAGGTTCGATATCAAAGCCGGAAAAGACTGGCTGAGCAGCGGCCTCGGGTCAAAGGGCAGTTTGTACGCCAAGTACACAATGATCATCCAACCACTGGTGCCATTACAGCTGACTTCAACACTGATTGCATTAACTACGATTAG 2097 0.412 MAKVTELNGVMKETEVEQKRNNDDNGDRSAEVVRWERFLPRVALRVLLVEADHSTRQIIAALLQKCSYTVIAVPDGLKAWETLKRKAPDLDLILTEVELPAISGYALLSLIMEHEICKNIPVIMMSSHDSVGMVLKCMLKGASDFLIKPIRRNELRNLWQHVWRRHAISTPPQNTFPQKKLKTASENNSASNKSSGSVASSKKNNECSERLSEAQDVSQLKSSSKSSEIDDVVKHEDFTKIERESAKQNGEAGVAAEISITIAPEAAKYNETFELTDLRLEQVHGCAETANKDEILRSDLGRDNPGINTEIHECTNEQVEHSKGAIDLITKFENLSKHHNENCGRGNATKFDCDTQLGLSLRRDFPGSSCKKARETTEETQRLNHSDTSAFSWYSNSKLLQPLFPTQSITATKVNNPIVVSDESHKLSEITSGNYCNYGCTDQKQENMTSTVIGQCSQVRPKSSTSHSGLLPATGVISDLKSKGHGNAFTSVFRAQSGIRSMWNPKPVCQKESSPFPTSISSHSNPESHNSDQRYDWSNEATHAYLNHNVKDNIHSDLARHDSPAADRSAGNSLCHDTANRISSSAYGSMGSGNDGDATSAMVSRNNPEGFSDNSCHNSDGLRVTDSHRYSQREAALTKFRLKRKERCYEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDHPTTGAITADFNTDCINYD* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1166 698 SMART REC_2 44 159 IPR001789 GO:0000160
Apr10g1166 698 Gene3D - 43 290 - -
Apr10g1166 698 PANTHER PRR RESPONSE REGULATOR 28 211 - -
Apr10g1166 698 PANTHER PRR RESPONSE REGULATOR 213 673 - -
Apr10g1166 698 Pfam Response regulator receiver domain 46 157 IPR001789 GO:0000160
Apr10g1166 698 MobiDBLite consensus disorder prediction 10 27 - -
Apr10g1166 698 MobiDBLite consensus disorder prediction 508 528 - -
Apr10g1166 698 Pfam CCT motif 633 675 IPR010402 GO:0005515
Apr10g1166 698 ProSiteProfiles CCT domain profile. 633 675 IPR010402 GO:0005515
Apr10g1166 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 211 IPR045279 GO:0009736
Apr10g1166 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 213 673 IPR045279 GO:0009736
Apr10g1166 698 MobiDBLite consensus disorder prediction 586 620 - -
Apr10g1166 698 SUPERFAMILY CheY-like 44 175 IPR011006 -
Apr10g1166 698 MobiDBLite consensus disorder prediction 508 534 - -
Apr10g1166 698 MobiDBLite consensus disorder prediction 1 27 - -
Apr10g1166 698 MobiDBLite consensus disorder prediction 170 226 - -
Apr10g1166 698 MobiDBLite consensus disorder prediction 170 231 - -
Apr10g1166 698 ProSiteProfiles Response regulatory domain profile. 45 163 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1166 Apr-Chr10 23891258 23896318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1166 596 678 Response Regulator Gene Family AT5G24470 55.422 1.31e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Apr10g1166 Response_reg 4.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1166 K12130 - gmx:100791698 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1166 10 23891258 23896318 Apr10g1166 10 23891258 23896318 ECH
Apr10g1166 10 23891258 23896318 Apr4g0967 4 7891425 7896788 ECH