Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1163 ATGGAGAGCCTTCAAGGACCCCTCAATTCATGTTTCTTTGGTGAGCATTTGGAAGAGAATTGTTTGGAGCAAGTTCTAGTTGATGCAGGAAGCTTGAGGCTTGAGGAGGAAGAACAGCTTCTAATATCAAGCCTAGAGGATAACATTAACATGCCGTTTCTTCAGATGCTTCAGAGTGTGGAATCCCCACAAATTTTCCCTCTGAAAGAACCAAACTTTCAAACGCTTCTGAGGCTGCAGCACCTGAAGAAACCATGGGAAGGAATAGCCTATATTCCAAGAATGGAGACCCAATTTCAAGCAGCATTGGAGCTTGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCAGTGAAATCAGAAAGCAACGAGCTTCAACACCTACTTTCAGTTTCATGTGGTGAGAAAGTGAGCTACGAGTGCAACCAGGAACCACCACACAAAGTATCACAACCATGTCTCAAATCGCAGCCAGTAACTACAACAAGGGAAAAGAGAAAGAGAAAAAGAACAAGGCCAAGCAAGAACAAGGAAGATGTGGAGAATCAACGCATGACCCACATTGCTGTTGAACGAAACCGCCGACGCCAAATGAATGACCATCTCAGTGTTCTTCGGTCCCTTATGCCCCCTTCTTATATTCAAAGGGGTGACCAAGCTTCAATCATTGGAGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAATCCCTTGAAGCACAAAAAAGGATGAGAAAGAATGAAGAGGGTGGTGCTTCTTCCATGAGGTTGTGTAACCCATCATCATCATCATCACCATCTCCACCACATGGTTATGGAATGAGGTCATCATCATCGTCCAACGATGAAGTGAACTGTGGTGATGAGGTGAAGGCAGAAAACAAGTCAGAAGCAGCAGATATAAAGGTCACCTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGTCAAAGAAAGCCTGGGCAATTGATAAAGGTAATTGTGGCTTTGGAGGACCTTAGGCTAACAATTCTGCACCTCAATATCACCTCATCCGAGGCTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGACTGTAAGCTAGGTTCAGCAAATGAAATTGCGGAAGCAGTTCATCATATATTCAACCTCATGAATGGTAGCTAA 1164 0.4373 MESLQGPLNSCFFGEHLEENCLEQVLVDAGSLRLEEEEQLLISSLEDNINMPFLQMLQSVESPQIFPLKEPNFQTLLRLQHLKKPWEGIAYIPRMETQFQAALELESCVTHDMLEMQSPVKSESNELQHLLSVSCGEKVSYECNQEPPHKVSQPCLKSQPVTTTREKRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGASSMRLCNPSSSSSPSPPHGYGMRSSSSSNDEVNCGDEVKAENKSEAADIKVTLIQTHVNLKIECQRKPGQLIKVIVALEDLRLTILHLNITSSEASVLYSLNLKIEEDCKLGSANEIAEAVHHIFNLMNGS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1163 387 SMART finulus 190 241 IPR011598 GO:0046983
Apr10g1163 387 Coils Coil 232 252 - -
Apr10g1163 387 Gene3D - 174 252 IPR036638 GO:0046983
Apr10g1163 387 PANTHER TRANSCRIPTION FACTOR BHLH70 19 386 - -
Apr10g1163 387 CDD bHLH_AtFAMA_like 187 255 - -
Apr10g1163 387 Pfam Helix-loop-helix DNA-binding domain 185 236 IPR011598 GO:0046983
Apr10g1163 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 252 IPR036638 GO:0046983
Apr10g1163 387 MobiDBLite consensus disorder prediction 258 289 - -
Apr10g1163 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 235 IPR011598 GO:0046983
Apr10g1163 387 PANTHER MAX DIMERIZATION, MAD 19 386 - -
Apr10g1163 387 MobiDBLite consensus disorder prediction 249 295 - -
Apr10g1163 387 MobiDBLite consensus disorder prediction 145 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1163 Apr-Chr10 23870745 23873423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1163 39 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 41.429 2.50e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr10g1163 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1163 - - gmx:100789928 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1163 10 23870745 23873423 Apr10g1163 10 23870745 23873423 ECH