Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1161 ATGTCTCCTTCATTGGAAACTAGTGATGTTGAACTTGAAGCCAAGCTCCATAAACAAGGAGGAACGAATCAAGTTCAAGATGTTGAAGATGGCATTCTTTTTGCCATGAACACTATGACTTCAATCGTGTTTCCAATGGCGGTTAGAACTGCGGTTGAGCTAGGAATCTTTGACATCATGGCCAAAGCTGGTGAGGGTGTGAAGCTCTCAGCAGAAGAGATTGCAATCCAACTTGGGCCAAAGAACCCAGAAGCACCCACAATGTTGGATCGTCTTCTAAGGTTGTTGGCAAGCAACTCCATGATATCTTGTTCTCTTGCTGATGATGATGATCAACATGGCCTTGTGTCTCCCAAGAGGCTCTATAGTCTCACCAATGCGTCCAAGTTTTTTATCACTGATGCTGATGGTGTGTCATTTGGAGCCACATTGAACTTGCTTCTCGACAATGTCTTCTTGGGAAGCTGGACGGAACTAAAAGGAGCCATCTTGGAAGGGGGTATACCATTCAACAGGGTCTATGGCATGGATGCATTTGAGTATCCAGCTAAGGATCCCAGGTTCAATGATGTTTTCAACAAAGCGATGTTCAACTTTACTACTATAGTCATGAAGAGGGTTCTTGAGTTCTACGAAGGTTTTGAGAACATTAATAGGCTAGTGGATGTTGGTGGTGGTCTTGGGATCAATCTCAAGCTCATCACTTCCAAATATCCTCATGTTCAGGGCACTAATTTTGACTTGCCTCATGTCATAGAAAATGCCCCTGCCTATCCCGGCGTAGAACATGTGGGTGGGGACATGTTTGAGAGTGTTCCTAATGGAGATGCCATTTTTATGAAGTGGATACTCCACGATTGGAGTGATGAACACTGCTTGCAGTTGTTGAAGAATTGCCATAAAGCTATTCCTAATGATGGAAAAGTGATTGTCGTGGACTCAATTCTTCCCGTTTTGCCTGAGGGTACACCTGTTGCAAAGAATGGTTTTCAAGCTGATCTATTAATGATGACTCAAAACCCAGGAGGAAAAGAGCGAACCCAAAATGAATTCATGGAATTGGCACTAGGATCTGGATTCAGTGGCATCAAATTCGTGTGTTGTGTCTCTGGCTCCTGGGTTATGGAGTTTTACAAATAG 1140 0.436 MSPSLETSDVELEAKLHKQGGTNQVQDVEDGILFAMNTMTSIVFPMAVRTAVELGIFDIMAKAGEGVKLSAEEIAIQLGPKNPEAPTMLDRLLRLLASNSMISCSLADDDDQHGLVSPKRLYSLTNASKFFITDADGVSFGATLNLLLDNVFLGSWTELKGAILEGGIPFNRVYGMDAFEYPAKDPRFNDVFNKAMFNFTTIVMKRVLEFYEGFENINRLVDVGGGLGINLKLITSKYPHVQGTNFDLPHVIENAPAYPGVEHVGGDMFESVPNGDAIFMKWILHDWSDEHCLQLLKNCHKAIPNDGKVIVVDSILPVLPEGTPVAKNGFQADLLMMTQNPGGKERTQNEFMELALGSGFSGIKFVCCVSGSWVMEFYK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1161 379 CDD AdoMet_MTases 219 312 - -
Apr10g1161 379 Pfam O-methyltransferase domain 156 361 IPR001077 GO:0008171
Apr10g1161 379 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 138 377 IPR029063 -
Apr10g1161 379 Pfam Dimerisation domain 46 97 IPR012967 GO:0046983
Apr10g1161 379 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 36 379 IPR016461 GO:0008168
Apr10g1161 379 PIRSF O-mtase 12 379 IPR016461 GO:0008168
Apr10g1161 379 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 379 - -
Apr10g1161 379 Gene3D - 14 131 IPR036388 -
Apr10g1161 379 Gene3D Vaccinia Virus protein VP39 133 379 IPR029063 -
Apr10g1161 379 SUPERFAMILY "Winged helix" DNA-binding domain 27 134 IPR036390 -
Apr10g1161 379 PANTHER O-METHYLTRANSFERASE 1 379 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1161 Apr-Chr10 23856705 23858859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1161 24 379 Monolignol Biosynthesis Gene Families AT5G54160 53.482 2.58e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1161 K13066 - gmx:100789402 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1161 10 23856705 23858859 Apr10g1161 10 23856705 23858859 ECH