Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1160 ATGGGAACCCTTCAAAATCTTAATGGCTTTGAACCAAAACAAGTCTTACCTATAAAGGGAGAATATGAAGATGAAGTAGAAAGCTTCTGCTATGCCCTTCAGCTAGCGAATTCTGTTTCTCTGCCCATGTCTTTGCACACTGTCATGGAGCTTGGAGTGTTTGATATACTCCATAGAGCTGGGCCAGGTGCCAAGGTCTCAGCCCATGACATTATGGCCCATATTCCTACCAAGAACCCAGATGCACCCATCATGCTAGATAGGATCCTCATGCTCCTAGCAAGTCATTCTGTGCTTCATTGTTCTCTTGATGATGAAAGTGGTTCTTTCAAGAAACTATACAGTCTGAATTCTGTGTCCAAATTTTTTGTTCTCAATGAGGATGGGTTGTCATTGAATCCCCTCATGGCATTGATTCATGACAAAGTCTTCTTACAGAGCTGGTCTCAATTGAAGGAGGCGATTTTGGAAGGGGGAATACCCTTCAATAGAGTTCATGGCATGCATGCCTTTGAGTATCCAAGCTTTGATCCAAGGTTCAATCAAGTTTTCAATGCAGCAATGAGCAACAGCACGCGTTTGGCAGCAAAGAAGATTCTTGAATCCTACAAAGGCTTTGAGCACATCAATAGGCTTGTGGATGTTGGAGGTGGTCATGGGGCTACCCTTAGTTTCATCACCTCCAAATACCCTAATATTCAGGGTACTAATTTTGACTTGCCTCATGTCATAAAAGAAGCTCCTTCTTATCCCGGTGTGAAGAACGAGGGAGGAAATATGTTTGAGAGTGTTCCACATGGAGACGCTATTTTTATGAAGTTTATACTGCACGATTGGAATGATGAACTATGCTTGAAGCTGTTGAAGAACTGCTATAATGCGCTTCCTGATGATGGGAAGGTAATTGTTGTGGAGCAAGTCCTTCCTTCAACCCCTGAAACCAGTACTTTGGTGAAGACCACATGCCAAACTGATGTTCTCATGATGACTCAAAATCCTGGAGGGAAGGAGAGAAATGGACAAGAATTTATGGAACTAGCAAAAAGATCCGGATTTAAGGGCATTAGATTTGCTGCTTCTGCTTATGATCTTAGGGTTATGGAGTTTTTCAAGTAG 1116 0.4247 MGTLQNLNGFEPKQVLPIKGEYEDEVESFCYALQLANSVSLPMSLHTVMELGVFDILHRAGPGAKVSAHDIMAHIPTKNPDAPIMLDRILMLLASHSVLHCSLDDESGSFKKLYSLNSVSKFFVLNEDGLSLNPLMALIHDKVFLQSWSQLKEAILEGGIPFNRVHGMHAFEYPSFDPRFNQVFNAAMSNSTRLAAKKILESYKGFEHINRLVDVGGGHGATLSFITSKYPNIQGTNFDLPHVIKEAPSYPGVKNEGGNMFESVPHGDAIFMKFILHDWNDELCLKLLKNCYNALPDDGKVIVVEQVLPSTPETSTLVKTTCQTDVLMMTQNPGGKERNGQEFMELAKRSGFKGIRFAASAYDLRVMEFFK* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1160 371 PIRSF O-mtase 14 371 IPR016461 GO:0008168
Apr10g1160 371 CDD AdoMet_MTases 211 304 - -
Apr10g1160 371 SUPERFAMILY "Winged helix" DNA-binding domain 24 125 IPR036390 -
Apr10g1160 371 Pfam O-methyltransferase domain 148 353 IPR001077 GO:0008171
Apr10g1160 371 Pfam Dimerisation domain 43 94 IPR012967 GO:0046983
Apr10g1160 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 361 IPR029063 -
Apr10g1160 371 PANTHER O-METHYLTRANSFERASE 19 371 IPR016461 GO:0008168
Apr10g1160 371 Gene3D - 15 123 IPR036388 -
Apr10g1160 371 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 19 371 - -
Apr10g1160 371 Gene3D Vaccinia Virus protein VP39 125 371 IPR029063 -
Apr10g1160 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 371 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1160 Apr-Chr10 23846660 23849475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1160 27 371 Monolignol Biosynthesis Gene Families AT5G54160 54.046 7.88e-137 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1160 K13066 - zju:107423771 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1160 10 23846660 23849475 Apr10g1160 10 23846660 23849475 ECH