Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1158 ATGGACGCATACTCCTCTGGTGAAGAAGTGATTGTTAAGACGAGAAAACCATACACAATCACGAAGCAAAGAGAACGATGGACAGAGGAGGAGCATAATAGGTTTCTAGAAGCTTTGAAGCTACATGGCCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCATGCACAGAAGTTCTTTACAAAGTTGGAGAAAGAGGCCCTTGTAAAGGGTGTTCCAATTGGAAAGGCCCTTGATATAGACATTCCCCCTCCACGGCCAAAGAGAAAACCGAGCAATCCTTATCCTCGGAAGACCAGGGTTGGTACCGCAACATTACAGAGTGGAGCAAAGGATGCAAAACTCAGTTCAGTTGAATCTTCACACGTTAACCAAGCACTGGACTTGGAGAAAGAACCACTTCCGGAGAAACATAATTTAGATGAAGTGCCAACAACTGTAAAAGAAAATAAGGATGAAAAGCGTTCAAAAGTATTTACTGTTCTCCGGGAGGTGCCTTGTTCCTCTGTATCTTCCGCAAACAAGAGTTCTATAACAATGTCAGTGCCGCTAGGGAATTCACGCGCCTTAAAGGATATTACACCTTCAGCGAAAGAGGCAATAGCACGAAATGAAAGAAATGAATCGTTCGTCACTATTGAACTTGAGAATCGGAAGTTGGAGACCGATAATGGAAAACAGACTAATGGCACTAGTGAAGACTCCACGTTAGACAATTCTGATGCTTTACAGGTGAAATTGGTTCAAAATGAGAACACAGATGGTCTTGATTGTGCATTAACAATAGATGGGATGCAAGGCAATCAGAATTACCCAAGGCATGTTACTGTGCACGTTATTGACGGGAATCTAGGAACGCGTACTCAAAATCCACAAGACATGTTGTTTAGAGACTCCATGTTTCAGCCAATAGGAGGGGTTAATGGGCAACCTAATCTTTTTACCAATTCAGCTGCATCGAACACTAGTGAAAGTCAAAACAACACAGCACGATCTTCTGTTCATCAATCATTTCTTCCTTATCCTCCCTTCCCACAACATAATCAGGATGATTACCAATCATTTCTTCACATGTCCTCCACATTTTCAAGCCTTATTGTCTCAACCTTGCTGCAAAACCCTGCAGCCCATGCTGCAGCTAGTTTTGCTGCTACATTTTGGCCCTATGCAAATCCAGAAACTCCAGCAGATTCTCCTAGGTGCTCCCAAGGAGGTTTTCCACCTAGACAAATTGGCTCTCCTCCAAGCGTTGCAGCTATTGCAGCTGCTACTGTTGCTGCTGCAACTGCATGGTGGGCAGCTCATGGATTGCTTCCTTTGTGTGCTCTTCATACTGCTTTTGCCTGTCCTCCTGCATCAGTGACTGCAGTTCCATCAATGAATAATACTGGTAGTGAAGCACCGGCATCAAAGACAGACCAAGGAAAGACTACTCTACAAAATCCTCCTCAGCAAGATCAGATGATGTTTCCAGAATACTCGGAAGCCCAGCAAGCTCAACATTCAGCTTCAAAGTCACCAGCTGTCATTTCATCAGATTCTGAGAGTGGAGATGCCAAGTTAAATACATCAAAAGCTACTGATCATGAGATGAACAAAACAATTTCCGAGCACCTTGATTCCAACAAAATGAAGGGCAGACAACAGGTTGACCGTTCCTCATGTGGTTCCAACACAACCTCTAGCAGCGATGTGGAAACTGATGCATTAGAGAAGGATGAAAAAAGAAAAGAAGAGCCTGAAACACCTGATGCTAATCATTTAGCCATTGAGTCTTGTAATCGTCGTAGTAGAAGCGTTAGCAACCTGACTGATTCTTGGAAGGAGGGGCGACTGGCCTTTCAAGCTCTATTCTCCAGAGAAGTGTTGCCTCAAAGCTTTTCACCTCCCCATGATTTGAAGAATGCAGATCATCAAGTGGAAAACATCAAGGATAACAAGCAAAACATAGATGAAGACCTTGACAGCAAGAAATGCAGTTCCAATTATGAAGAAGTGCAAAAAAACTCGCCATTTGTAGAAAATAACGAGGAGGGACTGCTAACCATAGGGCTGGGACAAGGAAAGCTTAAGACTCGTCGAACAGGCTTTAAGCCCTACAAAAGGTGTTCCGTGGAGGCCAATGAAAACAGGGTTGGAACGACCGGCAATCAAGGTGAAGAGAAAGGTTGTAAGAGAATACGCTTGGAAGGGGAGGCTTCAATTTAA 2235 0.4394 MDAYSSGEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEALVKGVPIGKALDIDIPPPRPKRKPSNPYPRKTRVGTATLQSGAKDAKLSSVESSHVNQALDLEKEPLPEKHNLDEVPTTVKENKDEKRSKVFTVLREVPCSSVSSANKSSITMSVPLGNSRALKDITPSAKEAIARNERNESFVTIELENRKLETDNGKQTNGTSEDSTLDNSDALQVKLVQNENTDGLDCALTIDGMQGNQNYPRHVTVHVIDGNLGTRTQNPQDMLFRDSMFQPIGGVNGQPNLFTNSAASNTSESQNNTARSSVHQSFLPYPPFPQHNQDDYQSFLHMSSTFSSLIVSTLLQNPAAHAAASFAATFWPYANPETPADSPRCSQGGFPPRQIGSPPSVAAIAAATVAAATAWWAAHGLLPLCALHTAFACPPASVTAVPSMNNTGSEAPASKTDQGKTTLQNPPQQDQMMFPEYSEAQQAQHSASKSPAVISSDSESGDAKLNTSKATDHEMNKTISEHLDSNKMKGRQQVDRSSCGSNTTSSSDVETDALEKDEKRKEEPETPDANHLAIESCNRRSRSVSNLTDSWKEGRLAFQALFSREVLPQSFSPPHDLKNADHQVENIKDNKQNIDEDLDSKKCSSNYEEVQKNSPFVENNEEGLLTIGLGQGKLKTRRTGFKPYKRCSVEANENRVGTTGNQGEEKGCKRIRLEGEASI* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1158 744 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Apr10g1158 744 MobiDBLite consensus disorder prediction 557 574 - -
Apr10g1158 744 PANTHER SWI/SNF COMPLEX-RELATED 2 726 - -
Apr10g1158 744 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Apr10g1158 744 MobiDBLite consensus disorder prediction 468 530 - -
Apr10g1158 744 Gene3D - 26 73 - -
Apr10g1158 744 SMART sant 23 71 IPR001005 -
Apr10g1158 744 MobiDBLite consensus disorder prediction 107 133 - -
Apr10g1158 744 PANTHER PROTEIN LHY 2 726 - -
Apr10g1158 744 Coils Coil 642 662 - -
Apr10g1158 744 MobiDBLite consensus disorder prediction 531 556 - -
Apr10g1158 744 MobiDBLite consensus disorder prediction 233 248 - -
Apr10g1158 744 MobiDBLite consensus disorder prediction 322 352 - -
Apr10g1158 744 MobiDBLite consensus disorder prediction 86 146 - -
Apr10g1158 744 MobiDBLite consensus disorder prediction 322 345 - -
Apr10g1158 744 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Apr10g1158 744 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Apr10g1158 744 MobiDBLite consensus disorder prediction 468 610 - -
Apr10g1158 744 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Apr10g1158 744 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Apr10g1158 744 MobiDBLite consensus disorder prediction 226 248 - -
Apr10g1158 744 CDD SANT 26 69 IPR001005 -
Apr10g1158 744 MobiDBLite consensus disorder prediction 575 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1158 Apr-Chr10 23816894 23827879 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr10g1158 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1158 K12133 - gmx:100101859 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1158 10 23816894 23827879 Apr10g1158 10 23816894 23827879 ECH