Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1155 ATGGAGTTGATGCAAGAAATGAAGGGGTATTCTGATAGCAGAGAAGAGGAGGAGGAAGAGGAAGTAGCAGAAGAAATCATCACAAGAGAAGAAAGCAGCAGGTTATTACACCAGCACCAAGATGCAGCAGCAGTAGCAGGTTCCAATTTCATCATCAACAACCACACAAGAAAGCAGCTAGACTTCATGGACTTGTCTTTGGGGAGCAACAAGGAAGAAGCCAATTTGCAAGGATCAGGAGGAGCTGATTCTGGTGTTTATGCTCATGCAACTGCTAGTTCTTCTGCCAATAGTAATCACCACCACCACCACCACCAGCAGCCTGCTGAGAAGGAGCACATGTTTGATAAAGTTGTGACACCAAGTGATGTTGGGAAGCTGAACCGGTTGGTGATTCCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCACAACCAATGAGAAAGGGTTGTTGCTCAATTTTGAAGATAGGAATGGAAAGTTGTGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCCGGAGACATTGTGTCCTTCCAGCGTGGTGTTGGGGAATTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCATCATCATCATCATCATGGCCCTGACCCTTCAGCCACACTCTACACACCTTTCTTTCTTCCAAATCAGCCACACTTAATGTCTATGATAAGATGGGGTACCACTGGTAGATTGTACTCACTTCCTTCACCAACCCCTCCACGCCACCATGACCATTTGCAACAACAACTCAATTACAACACCATGTATCATCACCCCTTTCACCATGCTGGTGGAAATGGAAGTCACCACTACAACTATCATGACATGAGTTCAGGATCTGGCTCAGTCTATTATCTCAGGTCAACAACACCATCCATGCCAATGCCTGATCATCAAAGCTTGAGTACAAGGCAACACCAAGAGGGAGGCAATAATGTTTCCCTTTCCCCTATGATCATTGATTCTGTTCCTGTTGCTCATCATCACCATCACCATCACCCGCACCATTCAAGTAGTAGTAATAGTAGTAGTGCTAGCACTGCAGCAAAACGGCTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCAACATCAGAAGATCCCAAATGTTTCAGCTTATTGTCCTCATCTTCGGTGGCACATATGGCTAATTCTAATTCACTTCCCTCTTCTACTCTACTACCTATTCAGCGTTTGAGGGAAGACACAATTTCACCATCATCATCATCAAGGTTTGGGGATCGGAGAGGGGAAGCCTCAATGCTTTTTGATCTGGACCCTTCTTTGCAATACCGGCAGTGA 1389 0.455 MELMQEMKGYSDSREEEEEEEVAEEIITREESSRLLHQHQDAAAVAGSNFIINNHTRKQLDFMDLSLGSNKEEANLQGSGGADSGVYAHATASSSANSNHHHHHHQQPAEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTTNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPDHHHHHHGPDPSATLYTPFFLPNQPHLMSMIRWGTTGRLYSLPSPTPPRHHDHLQQQLNYNTMYHHPFHHAGGNGSHHYNYHDMSSGSGSVYYLRSTTPSMPMPDHQSLSTRQHQEGGNNVSLSPMIIDSVPVAHHHHHHHPHHSSSSNSSSASTAAKRLRLFGVNMECASSTSEDPKCFSLLSSSSVAHMANSNSLPSSTLLPIQRLREDTISPSSSSRFGDRRGEASMLFDLDPSLQYRQ* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1155 462 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 90 414 - -
Apr10g1155 462 SUPERFAMILY DNA-binding pseudobarrel domain 111 216 IPR015300 -
Apr10g1155 462 MobiDBLite consensus disorder prediction 1 26 - -
Apr10g1155 462 Gene3D - 109 228 IPR015300 -
Apr10g1155 462 MobiDBLite consensus disorder prediction 316 338 - -
Apr10g1155 462 Pfam B3 DNA binding domain 115 219 IPR003340 GO:0003677
Apr10g1155 462 SMART B3_2 115 220 IPR003340 GO:0003677
Apr10g1155 462 ProSiteProfiles B3 DNA-binding domain profile. 115 220 IPR003340 GO:0003677
Apr10g1155 462 MobiDBLite consensus disorder prediction 74 113 - -
Apr10g1155 462 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 90 414 IPR044800 GO:0003700
Apr10g1155 462 MobiDBLite consensus disorder prediction 354 375 - -
Apr10g1155 462 CDD B3_DNA 113 202 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1155 Apr-Chr10 23783454 23786004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1155 106 392 RAV Transcription Factor Family AT2G46870 49.315 4.48e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr10g1155 B3 3.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1155 - - gmx:100778733 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1155 10 23783454 23786004 Apr10g1155 10 23783454 23786004 ECH